PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G38360.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 737aa    MW: 81427.1 Da    PI: 8.0899
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G38360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.21.4e-1368122256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r+ +++t +q e+Le +F  + +p+  ++++L++ +gL  +qVk+WFqN+R++ k
  ONIVA01G38360.1  68 RRLQRLTGKQSEVLEGFFSICGHPDDGQKRHLSETTGLGLDQVKFWFQNKRTQVK 122
                      445789*********************************************9877 PP
2START89.56.9e-292224382205
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S...EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla...kaetl 82 
                      la  a+ +l+ +a++  ++W+ ++    e +n++  + +  ++++      +++ea ra+ +v m+   +v  l+d    + + ++   + +++
  ONIVA01G38360.1 222 LAKNAMHALIILAESHVALWFPVPgcsyEVLNKMMAYDQAYPGDNsanaigFKTEATRAVSMVMMDYKSVVDFLMDPY-NYRTFFPeviSGAVT 314
                      678899999999************999955555555555555555566699999************996665555555.555555544499999 PP

                      EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      ++i +        g++qlm+ e++++splvp R+ +f+Ry+  l++g  v+ dvS+d  +  +      ++++ pSg+li++   + +kvt +e
  ONIVA01G38360.1 315 NRIYTWptsdgynGVIQLMTVEMMFPSPLVPaRKCTFLRYCNVLNEGLVVVIDVSLDDGSIFS------KCRKMPSGFLIQSIRPNSCKVTAIE 402
                      99977777789*********************************************9988866......7************************ PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                      hv +++  +h+l+++ ++ gl++ga++wvat+ rq +
  ONIVA01G38360.1 403 HVLVDDTGVHELYQPCMN-GLVFGARRWVATMARQSA 438
                      ***************985.89***********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-1459118IPR009057Homeodomain-like
SuperFamilySSF466891.88E-1559126IPR009057Homeodomain-like
PROSITE profilePS5007114.26864124IPR001356Homeobox domain
CDDcd000861.62E-1265124No hitNo description
SMARTSM003893.5E-1066128IPR001356Homeobox domain
PfamPF000463.5E-1168122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084818.821212442IPR002913START domain
CDDcd088755.47E-93216438No hitNo description
SuperFamilySSF559611.56E-20219437No hitNo description
SMARTSM002348.4E-7221439IPR002913START domain
PfamPF018523.4E-22222438IPR002913START domain
SuperFamilySSF559611.19E-8456664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MEMNQQHNEG NESFVALMNG VAGDGTATLP NDGEQSMSIP ARELFAAIEA DSGLLPVNSS  60
NTNEKRKRRL QRLTGKQSEV LEGFFSICGH PDDGQKRHLS ETTGLGLDQV KFWFQNKRTQ  120
VKTMCWKEEN YKLSVENEIL RDENRRVKIA HCTAICLTCR NSSVQNQLAV EMERLMGQSE  180
WLQQEIARSN GTPPAANLAF QLNSSADYVF SGQHDQQMIA ELAKNAMHAL IILAESHVAL  240
WFPVPGCSYE VLNKMMAYDQ AYPGDNSANA IGFKTEATRA VSMVMMDYKS VVDFLMDPYN  300
YRTFFPEVIS GAVTNRIYTW PTSDGYNGVI QLMTVEMMFP SPLVPARKCT FLRYCNVLNE  360
GLVVVIDVSL DDGSIFSKCR KMPSGFLIQS IRPNSCKVTA IEHVLVDDTG VHELYQPCMN  420
GLVFGARRWV ATMARQSARM RDVHHNKTAP QVSTKGRKNL MKLADDLLAS FAGGITATGG  480
GTWTVVIGAG TEKDIRVAYR RTTEGSSSYN AILSVSASLR LPLPMRKTFD LLRNLTHRCK  540
WDVLVHGSVV KEEVTIARGV GNDDTVTVLH CKRAGREDRG RTMILQNNGY DASGSFMVYS  600
QIDSELMNTM VLSPSDLPPG RGGPSLYPTG FSLLPDVEAA QDSSGIALGE VGGTLMTMGF  660
QIPVKLASGD RMYSRSAASA IRLMTDTIAL VKKTLMNEHS GIYGVSPEKR EVRVQIKIKN  720
MRRGFIGSDH PASPRIC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3178820.0AF317882.1 Oryza sativa transcription factor 1 (TF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632244.10.0homeobox-leucine zipper protein TF1
SwissprotQ5ZAY00.0TF1_ORYSJ; Homeobox-leucine zipper protein TF1
TrEMBLA0A0E0FUA70.0A0A0E0FUA7_ORYNI; Uncharacterized protein
STRINGONIVA01G38360.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.21e-102HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]