PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G39120.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 280aa    MW: 30604.9 Da    PI: 4.7947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G39120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-16119167355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +grW +eIrdp+    +  r +lg+f+ta eAa a++a +++++g
  ONIVA01G39120.1 119 YHGIRQRP-WGRWSSEIRDPV----KgVRLWLGTFDTAVEAALAYDAEARRIHG 167
                      89******.**********75....44************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.982118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-28118175IPR001471AP2/ERF domain
SMARTSM003807.4E-33118181IPR001471AP2/ERF domain
CDDcd000183.25E-26119174No hitNo description
SuperFamilySSF541714.51E-20119175IPR016177DNA-binding domain
PRINTSPR003671.7E-9119130IPR001471AP2/ERF domain
PRINTSPR003671.7E-9141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MCGGEVIPAD MPAAPFTPRH GDGETWVDRK RRNKKKRKRG ADEEWEAAFQ EFMAADDDDD  60
GGGLVLSSKS LVLRSPGEND AGRGAAATMS MPLDPVTEEA EPAVAEKPRR RRPRRSYEYH  120
GIRQRPWGRW SSEIRDPVKG VRLWLGTFDT AVEAALAYDA EARRIHGWKA RTNFPPADLS  180
SPPPPSQPLC FLLNDNGLIT IGEAPTDDAA STSTSTTEAS GDARIQLECC SDDVMDSLLA  240
GYDVASGDDI WTWTSGASST SVNQEIKTPS IHQNISYAVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17118175563ATERF1
3gcc_A3e-17118175563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12838RKRRNKKKRKR
22938KRRNKKKRKR
33038RRNKKKRKR
4106113KPRRRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0115980.0DQ011598.1 Oryza sativa (indica cultivar-group) cultivar IR40931-26 sub_clone 26D17-13, complete sequence.
GenBankFR7204570.0FR720457.1 Oryza nivara sub1A-1 gene, bio material IRGC 80507.
GenBankFR7204590.0FR720459.1 Oryza rufipogon sub1A-1 gene, bio material IRGC 81882.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696560.19e-54PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A0E0FUK50.0A0A0E0FUK5_ORYNI; Uncharacterized protein
STRINGONIVA01G39120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.14e-18ERF family protein