PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G40310.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 229aa    MW: 25513.6 Da    PI: 6.2753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G40310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.66.7e-1034762058
                     S-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
             WRKY 20 fprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58
                       + YYrCt++   gCp+ k+ve+  +edp ++ ++Y++eH++
  ONIVA01G40310.1 34 AMKCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIYTNEHTC 76
                     5678******98999*******9852689************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.1E-92878IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-103177IPR003657WRKY domain
SuperFamilySSF1182901.27E-93278IPR003657WRKY domain
PfamPF031063.4E-113276IPR003657WRKY domain
PROSITE profilePS508118.9723679IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVKRSDNMDS SSECSRGAHK RLLQDSRSYD QENAMKCYYR CTYHQDHGCP ASKHVEQHNS  60
EDPPLFRVIY TNEHTCGTSN SASDYMASSM QIQQIADASL RKAQAAERLR KAEVETPRLM  120
HFPPPRCSGG YNMAMKEEKD VIVSSLLTVI RGCHIAESAG NNSAAALPVN RPPPAVARSD  180
HYSCSYAISP ELLPASDDLT LDFMLDSVLD PHWVEPLDLA WLKESTHTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642042.11e-163probable WRKY transcription factor 64
TrEMBLA0A0E0FV191e-171A0A0E0FV19_ORYNI; Uncharacterized protein
STRINGONIVA01G40310.11e-172(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.12e-10WRKY DNA-binding protein 38