PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G43260.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 349aa    MW: 36202.5 Da    PI: 6.3474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G43260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-20127176255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  ONIVA01G43260.1 127 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 176
                      7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-22127185IPR016177DNA-binding domain
SMARTSM003805.3E-36127190IPR001471AP2/ERF domain
PROSITE profilePS5103225.686127184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-33127185IPR001471AP2/ERF domain
PfamPF008471.1E-13127176IPR001471AP2/ERF domain
PRINTSPR003671.1E-11128139IPR001471AP2/ERF domain
CDDcd000187.71E-15135186No hitNo description
PRINTSPR003671.1E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTVAGASELM SGYYQAQEMS TMVSALARVV AGGGGGDGDG DQWAWSSPSP SSSAAAAAAR  60
GVQERRREEQ AMHELAGYAC GGAPSPEFAG SEQSSDTQSA SAATMDEHHS PVGGGGNAEG  120
PDTPRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFETA EAAARAYDEA ALRFRGSRAK  180
LNFPEDARLY PTAATTTTAA PPPAPVAAAS PSAAIYPGAS QSAEYLRYQM LLQGRLTTAT  240
PNQGTLLPFY GGGGGGGSMT NPYGGGGGGA MSGFLGSYYS FPTPSVSVAT VPSSTSSAPG  300
NYYSSHGGSH QSMSAAEEWN WENALVYPAT AASWSESSYH HHPPPPHTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23128184663ATERF1
3gcc_A2e-23128184663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032860.0AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613619.11e-164ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0FW670.0A0A0E0FW67_ORYNI; Uncharacterized protein
STRINGONIVA01G43260.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-20ethylene response factor 110