PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G44820.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 407aa    MW: 42085.5 Da    PI: 6.3063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G44820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05103125123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F ++   + H+r+H
  ONIVA01G44820.1 103 FPCHVCSKEFGSRKAVHGHMRVH 125
                      89*******************99 PP
2zf-C2H216.81.9e-05296318123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk Fs+   L  H+r+H
  ONIVA01G44820.1 296 HPCKTCGKEFSTGVALGGHMRKH 318
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0012102126IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.676103130IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-9103125No hitNo description
SMARTSM003550.0089103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SMARTSM003555243267IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245267IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-9291318No hitNo description
PROSITE profilePS5015711.219296323IPR007087Zinc finger, C2H2
SMARTSM003550.019296318IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-4296318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.9E-10296320IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRDEEE EGVNPASKRR RLEDILAETR  60
GALPLPSPTP SSSGSEGTIS DDHGDGIAGA AGAADAPVAR VAFPCHVCSK EFGSRKAVHG  120
HMRVHQADKD KEKEPSLHLA LGWTTTGKRG ANGNARAVTV AFAPMEQAVG DDDGDARAIV  180
LAPAAQPQPQ PMVVAEAANP PNQVADDNHR LPVPAAAPYV GAAAAPARRR ARPKRNAGQG  240
GPYRCSYPGC KGEYRTHQGL GGHVAGHINR EKQAAAAAQG GSGGGLGGGA RPEGNHPCKT  300
CGKEFSTGVA LGGHMRKHYD PKKKKKHAGL VLTLSVAPPT PAPAPSIAGA ALPPAEVKAD  360
VDEHEAEQVP MAPVSPPAEA RGNIVRIFGV DIEKPADEEE QEGGSDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14751KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881238.10.0zinc finger protein ZAT1-like
TrEMBLA0A0E0FWT00.0A0A0E0FWT0_ORYNI; Uncharacterized protein
STRINGONIVA01G44820.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-09C2H2 family protein