PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G45020.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 426aa    MW: 44408.1 Da    PI: 5.7611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G45020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.67.7e-85414233374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       l+l+cA+ v+ gdl  a+++ + +   a p+g++  Rla++f++AL a   +      k  +        ++ + aa+ ++ ++ P+l+f+hl
  ONIVA01G45020.1  41 GLVLACADLVHRGDLDGARRVAEAVLAVADPRGEAGDRLAHHFARALLALRGG-----GKGGHGGGG--GGVVPSSAAYLAYIKIAPFLRFAHL 127
                      5789******************************************9886666.....222222222..236667789999************* PP

             GRAS  97 taNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      taNqaIlea++ +         + +Hi+D+d+ +G+QWp+Llqa+a+R+    ++pp++R+Tg g     +++ l +tg+rL+ f ++l++pf+
  ONIVA01G45020.1 128 TANQAILEAAAVAaadaggahrRVLHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLPFR 217
                      ********98766666777784455************************88888899*********....************************ PP

             GRAS 178 fnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflea 260
                      f++l    + +l++  + +L+++p+E+laVn+vl lh+l   +++l+     +L+ vks++P vv+++e+e  +++         ++ +r++ a
  ONIVA01G45020.1 218 FHPLilpCTAELAADPTAALELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRVAAA 306
                      ****554445666668899********************8.5666666....*******************888655577788999******** PP

             GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353
                      ++yys++fd+lea++p++s +r  vE+e+l+rei  +va+ ga    r + +  W ++ ++aG+ p pls +aa+qa+lllr ++ s+gy+ ++
  ONIVA01G45020.1 307 MDYYSSVFDALEATVPPASADRLAVEQEILSREIDAAVAAPGAGGGGRARDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSEGYKADD 400
                      *********************************************************************************************9 PP

             GRAS 354 e..sgslvlgWkdrpLvsvSaWr 374
                      +  +g+ +l W++rpL+svS+W+
  ONIVA01G45020.1 401 DggRGACFLRWQQRPLMSVSSWQ 423
                      96667788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.44113400IPR005202Transcription factor GRAS
PfamPF035142.7E-8241423IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLGSSPARDR GGGDDAEASE QPQPQPQPPL SPRAGGGEAR GLVLACADLV HRGDLDGARR  60
VAEAVLAVAD PRGEAGDRLA HHFARALLAL RGGGKGGHGG GGGGVVPSSA AYLAYIKIAP  120
FLRFAHLTAN QAILEAAAVA AADAGGAHRR VLHIVDLDAA HGVQWPPLLQ AIADRADPAV  180
GPPPEVRLTG AGTDRDVLLR TGDRLRAFSS SLNLPFRFHP LILPCTAELA ADPTAALELH  240
PDETLAVNCV LFLHKLGGDG ELAAFLRWVK SMNPAVVTIA EREGVLGGDV DDDNVPDELP  300
RRVAAAMDYY SSVFDALEAT VPPASADRLA VEQEILSREI DAAVAAPGAG GGGRARDFDA  360
WASAARAAGL APRPLSAFAA SQARLLLRLH YPSEGYKADD DGGRGACFLR WQQRPLMSVS  420
SWQPQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-464642526381Protein SCARECROW
5b3h_A4e-464642525380Protein SCARECROW
5b3h_D4e-464642525380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGKGGHGGG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041910.0AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624347.20.0protein MONOCULM 1-like
RefseqXP_025879052.10.0protein MONOCULM 1-like
SwissprotQ84MM91e-130MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0E0FWV10.0A0A0E0FWV1_ORYNI; Uncharacterized protein
STRINGONIVA01G45020.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.17e-56GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]