PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G45890.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 740aa MW: 80737.6 Da PI: 7.249

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G45890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	303.9	3.8e-93	157	492	1	334
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal..ppsetsekn..sseelaalklfsevsP 89 lv+lL++cAeav+ +d ++a alL +l+ a +g+++qR+a++f+++La rl + a + + s+ + al l +e++P ONIVA01G45890.1 157 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFVQGLADRLPLAHPPALgPASmaFCIPPSSCAgrDGARGEALALAYELCP 250 689***********************************************987444332122211222222222345667788889** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +l+f+h++aN +lea+ege+ vH++D++++ G QW Ll+ La+R++g+p ++R+Tgvg+ + ++++++g+ L+ +Ae lg+ +ef ONIVA01G45890.1 251 YLRFAHFVANACMLEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTMRAIGRELEAYAEGLGMYLEF 340 ***********************98762222567*********77666*****....9******************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 + + + le+l++++L v+ +Ea+a+n+vl+lh++++es + +vL+++++lsP+ +v+veq+a hn++ Fl rf+eal+yy+alfd+l+ ONIVA01G45890.1 341 RG-INRGLESLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALD 430 .799****************************88877777...8****************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 a lpr + r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++ a ONIVA01G45890.1 431 AALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMAAK 492 ******************************************************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.095	131	512	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-90	157	492	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MGMSPEPCKS ISDCSQQQSH HLTLTQQQDS TIICTNQELD YYYRFYDVDE AAFDGNEVEL 60 VSRFSKVTRM DHMISSPYQP TWSPAQAAVD VVGSSETSRV RKKRFWDVLE SCKQKVEAME 120 AMDTPATATF RVGAGDGGSG GGGGAGGGGG GADGMRLVQL LVACAEAVAC RDRAQAAALL 180 RELQAGAPVH GTAFQRVASC FVQGLADRLP LAHPPALGPA SMAFCIPPSS CAGRDGARGE 240 ALALAYELCP YLRFAHFVAN ACMLEAFEGE SNVHVVDLGM TLGLDRGHQW RGLLDGLAAR 300 ASGKPARVRV TGVGARMDTM RAIGRELEAY AEGLGMYLEF RGINRGLESL HIDDLGVDAD 360 EAVAINSVLE LHSVVKESRG ALNSVLQTIR KLSPRAFVLV EQDAGHNGPF FLGRFMEALH 420 YYAALFDALD AALPRYDARR ARVEQFHFGA EIRNVVGCEG AARVERHERA DQWRRRMSRA 480 GFQSVPIKMA AKAREQFGYT SPRSSLMAAD PSPQMHKTKK LVRVRKQVEV VLPVEVLPPL 540 PPLAVICKHK EHVWITQDDY TFRLLDINLV LTLAAVGCAG LGFFLFPRNR ALGMALAAAF 600 FVGFFAHAKA SMLLHWDVFP RFVLAILDRG RRLMAVACVA IVVVCVLRFG TQDGVRRATL 660 FIWTVAMALA ALTGWVLRVE RRVSAAAEFV ELDGDTSLWI IRKDGRLAAV ADIEGDTTKK 720 SYLFYYDVDD AGFGGNEVEA

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MGMSPEPCKS ISDCSQQQSH HLTLTQQQDS TIICTNQELD YYYRFYDVDE AAFDGNEVEL  60
VSRFSKVTRM DHMISSPYQP TWSPAQAAVD VVGSSETSRV RKKRFWDVLE SCKQKVEAME  120
AMDTPATATF RVGAGDGGSG GGGGAGGGGG GADGMRLVQL LVACAEAVAC RDRAQAAALL  180
RELQAGAPVH GTAFQRVASC FVQGLADRLP LAHPPALGPA SMAFCIPPSS CAGRDGARGE  240
ALALAYELCP YLRFAHFVAN ACMLEAFEGE SNVHVVDLGM TLGLDRGHQW RGLLDGLAAR  300
ASGKPARVRV TGVGARMDTM RAIGRELEAY AEGLGMYLEF RGINRGLESL HIDDLGVDAD  360
EAVAINSVLE LHSVVKESRG ALNSVLQTIR KLSPRAFVLV EQDAGHNGPF FLGRFMEALH  420
YYAALFDALD AALPRYDARR ARVEQFHFGA EIRNVVGCEG AARVERHERA DQWRRRMSRA  480
GFQSVPIKMA AKAREQFGYT SPRSSLMAAD PSPQMHKTKK LVRVRKQVEV VLPVEVLPPL  540
PPLAVICKHK EHVWITQDDY TFRLLDINLV LTLAAVGCAG LGFFLFPRNR ALGMALAAAF  600
FVGFFAHAKA SMLLHWDVFP RFVLAILDRG RRLMAVACVA IVVVCVLRFG TQDGVRRATL  660
FIWTVAMALA ALTGWVLRVE RRVSAAAEFV ELDGDTSLWI IRKDGRLAAV ADIEGDTTKK  720
SYLFYYDVDD AGFGGNEVEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-49	157	494	4	335	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646199.1	0.0	DELLA protein RGL1
TrEMBL	A0A0E0FX72	0.0	A0A0E0FX72_ORYNI; Uncharacterized protein
STRING	ONIVA01G45890.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5640	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-45	RGA-like 2