PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G45910.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 275aa MW: 30505.7 Da PI: 6.717

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G45910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	209.4	2e-64	72	274	167	374
GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 +Ae lg+ +ef+ + + le+l++++L v+ +Ea+a+n+vl+lh++++es + +vL+++++lsP+ +v+veq+a hn++ Fl rf+ea ONIVA01G45910.1 72 AYAEGLGMYLEFRG-INRGLESLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEA 161 58999*******.799**************************88877777...8****************************** PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353 l+yy+alfd+l+a lpr + r vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++ ++a+ l + + +dgy+v + ONIVA01G45910.1 162 LHYYAALFDALDAALPRYDARRERVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGDGYTVAD 253 *****************************************************************754..467777777777**** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 e+ +lvlgWk++p++++S+W+ ONIVA01G45910.1 254 EKVCLVLGWKGKPVIAASCWK 274 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.39	1	255	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-62	72	274	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEMDKFSSSY QPSWPPAQAT VDVVGSVETP ARRAFQRVAS FFVQELLDRR ASAGAGPCEH 60 GVLHPAVVVR EAYAEGLGMY LEFRGINRGL ESLHIDDLGV DADEAVAINS VLELHSVVKE 120 SRGALNSVLQ TIRKLSPRAF VLVEQDAGHN GPFFLGRFME ALHYYAALFD ALDAALPRYD 180 ARRERVEQFH FGAEIRNVVG CEGAARVERH ERADQWRRRM SRAGFQSVPI KMAAKAREWL 240 DENAGGDGYT VADEKVCLVL GWKGKPVIAA SCWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-28	73	273	182	378	Protein SCARECROW
5b3h_A	7e-28	73	273	181	377	Protein SCARECROW
5b3h_D	7e-28	73	273	181	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003791	0.0	AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBank	AP006757	0.0	AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646199.1	1e-141	DELLA protein RGL1
Refseq	XP_025878199.1	1e-141	DELLA protein GAI-like
TrEMBL	A0A0E0FX74	0.0	A0A0E0FX74_ORYNI; Uncharacterized protein
TrEMBL	A2WY20	0.0	A2WY20_ORYSI; Uncharacterized protein
STRING	ONIVA01G45910.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5640	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	9e-34	RGA-like 1