PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G01060.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 865aa    MW: 97799.1 Da    PI: 7.845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G01060.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05557579123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg sF  + +Lk+H+++H
  ONIVA02G01060.2 557 HTCQECGASFQKPAHLKQHMQSH 579
                      79*******************99 PP
2zf-C2H220.61.2e-06585609123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s+ rk++L+rH+ +H
  ONIVA02G01060.2 585 FICPleDCPFSYIRKDHLNRHMLKH 609
                      78*********************99 PP
3zf-C2H214.20.00013614639123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   Cg+ Fs k n++rH +  H
  ONIVA02G01060.2 614 FTCSmdGCGRKFSIKANMQRHVKEiH 639
                      89********************9988 PP
4zf-C2H214.40.00011651675123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+k+F+  s +k+H  +H
  ONIVA02G01060.2 651 FVCKeeGCNKVFKYASKMKKHEESH 675
                      89*******************9988 PP
5zf-C2H216.52.4e-05741765223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++Hi+  H
  ONIVA02G01060.2 741 KCSfeGCECSFSNKSNLTKHIKAsH 765
                      688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.16666100IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-771170IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.701136170IPR002885Pentatricopeptide repeat
PfamPF015351.1E-4138165IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-4138166IPR002885Pentatricopeptide repeat
PfamPF015350.084169196IPR002885Pentatricopeptide repeat
PfamPF130412.8E-7197245IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.063198232IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-5200233IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.903268298IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-7269299IPR011990Tetratricopeptide-like helical domain
PfamPF015350.029273297IPR002885Pentatricopeptide repeat
PfamPF130411.3E-10298346IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.6E-6301334IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.219334364IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.8E-4336363IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.774370400IPR002885Pentatricopeptide repeat
PfamPF015350.042373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-7400465IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.579402432IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.476436470IPR002885Pentatricopeptide repeat
SMARTSM0035524511533IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5554576IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017557579IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.547557584IPR007087Zinc finger, C2H2
PROSITE patternPS000280559579IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-10570611No hitNo description
Gene3DG3DSA:3.30.160.601.5E-11577611IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-4585609IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808585614IPR007087Zinc finger, C2H2
PROSITE patternPS000280587609IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-8595643No hitNo description
Gene3DG3DSA:3.30.160.602.9E-7612641IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-4614639IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.154614644IPR007087Zinc finger, C2H2
PROSITE patternPS000280616639IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-7648675IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0038651675IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764651675IPR007087Zinc finger, C2H2
PROSITE patternPS000280653675IPR007087Zinc finger, C2H2
SMARTSM003555.7683708IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280685708IPR007087Zinc finger, C2H2
SMARTSM0035515711732IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-5722762IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.22E-7724777No hitNo description
SMARTSM003550.002740765IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.365740770IPR007087Zinc finger, C2H2
PROSITE patternPS000280742765IPR007087Zinc finger, C2H2
SMARTSM003555.8771797IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280773797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MNRSVCHHLL TQCKTIRELQ RIHAQALTHG LHPNQQSISC KIFRSYAEFG RPADAGRLFD  60
EIPHPDIISF TSLMSLHLKL DHHWKAISVF SHAIASGHRP DGFAAVGALS ASGGLGDQRI  120
GSVVHGLIFR CGLDSELVVC NALVDMYCRC GKFEPARTVF DRMLVKDEVT WGSMLYGYMK  180
CVGVDSALSF FYQMPMKSTV SWTALITGHV QDKQPIQALE LFGKMLLEGH RPNHITIVGV  240
LSACADIGAL DLGRAIHGYG SKSNATTNII VTNALMDMYA KSGSIASAFS VFEEVQMKDA  300
FTWTTMISSF TVQGNGRKAV ELFWDMLRSG ILPNSVTFVS VLSACSHAGL IQEGRELFDK  360
MREVYHIDPR LEHYGCMVDL LGRGGLLEEA EALIDHMDVE PDIVIWRSLL SACLAHGNDR  420
LAEIAGKEII KREPGDDGVY VLLWNMYALS NRWKEALDMR KQMLSRKIYK KPGCSWIEVD  480
GVVHEFLMCS GDDIDGDTRV EATQHRDIRR YKCEFCTVVR SKKCLIRAHM VAHHKEELDK  540
SEIYKSNGEK VVHEGDHTCQ ECGASFQKPA HLKQHMQSHS DERSFICPLE DCPFSYIRKD  600
HLNRHMLKHQ GKLFTCSMDG CGRKFSIKAN MQRHVKEIHE DETATKSNRQ FVCKEEGCNK  660
VFKYASKMKK HEESHVKLDY VEVVCCEPGC MKTFTNVECL RAHNQACHQY VQCDICGEKH  720
LKKNIKRHLR AHEVPSTERI KCSFEGCECS FSNKSNLTKH IKASHDQVKP FACRFTGCEK  780
VFPYKHVRDN HEKSSAHVYT QANFTEMDEH LLSCPRGGRK RKAVTVETLT RKRVTMHGDA  840
SSLDNGTEYL RWLLSGGDDD SSQTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-572041815333PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878917.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial
TrEMBLA0A0E0G0400.0A0A0E0G040_ORYNI; Uncharacterized protein
STRINGONIVA02G01060.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-100transcription factor IIIA