PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G02260.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 708aa MW: 79159.9 Da PI: 7.387

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G02260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	170.8	7.2e-53	57	208	1	142
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 gg +++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl ++++ g ++ +s+e+ ONIVA02G02260.1 57 GGEREREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVET 150 4678899******************************************************************998999*********** PP DUF822 93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsv 142 ++ s+l+s+a+ +p++s+++++++++++spsslds+ +a++ ++ +v+s ONIVA02G02260.1 151 PSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsiknekyGNSDSVSSL 208 99899********************************9987766655444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.3E-49	59	211	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	1.3E-158	229	662	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	3.91E-163	229	701	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	1.5E-69	254	610	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.4E-41	267	281	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.4E-41	288	306	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.4E-41	401	423	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.4E-41	500	516	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.4E-41	517	528	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.4E-41	535	558	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	8.4E-41	573	595	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADPSPS PSPAAPPPRR RGGGGGGGER 60 EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP 120 DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS 180 PSSLDSVVVA DQSIKNEKYG NSDSVSSLNC LENHQLTRAS AALAGDYTRT PYIPVYASLP 240 MGIINSHCQL IDPEGIRAEL MHLKSLNVDG VIVDCWWGIV EAWIPHKYEW SGYRDLFGII 300 KEFKLKVQVV LSFHGSGETG SGGVSLPKWV MEIAQENQDV FFTDREGRRN MECLSWGIDK 360 ERVLRGRTGI EAYFDFMRSF HMEFRNLTEE GLISAIEIGL GVSGELKYPS CPERMGWRYP 420 GIVLRQNLRQ AALSRGHLFW ARGPDNAGYY NSRPHETGFF CDGGDYDSYY GRFFLNWYSG 480 ILIDHVDQVL SLATLAFDGV ETVVKIPSIY WWYRTASHAA ELTAGFYNPT NRDGYSPVFR 540 MLKKHSVILK FVCYGPEFTI QENNEAFADP EGLTWQVMNA AWDHGLSISV ESALPCLDGE 600 MYSQILDTAK PRHDPDRHHV SFFAYRQLPS FLLQRDVCFS ELGNFVKCMH DGSLIKIVVR 660 VRIIIAHQSG SSALDVLMQR LTVLCIRGVS TYPIKIIRSR YLTTVIAL

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADPSPS PSPAAPPPRR RGGGGGGGER  60
EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP  120
DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS  180
PSSLDSVVVA DQSIKNEKYG NSDSVSSLNC LENHQLTRAS AALAGDYTRT PYIPVYASLP  240
MGIINSHCQL IDPEGIRAEL MHLKSLNVDG VIVDCWWGIV EAWIPHKYEW SGYRDLFGII  300
KEFKLKVQVV LSFHGSGETG SGGVSLPKWV MEIAQENQDV FFTDREGRRN MECLSWGIDK  360
ERVLRGRTGI EAYFDFMRSF HMEFRNLTEE GLISAIEIGL GVSGELKYPS CPERMGWRYP  420
GIVLRQNLRQ AALSRGHLFW ARGPDNAGYY NSRPHETGFF CDGGDYDSYY GRFFLNWYSG  480
ILIDHVDQVL SLATLAFDGV ETVVKIPSIY WWYRTASHAA ELTAGFYNPT NRDGYSPVFR  540
MLKKHSVILK FVCYGPEFTI QENNEAFADP EGLTWQVMNA AWDHGLSISV ESALPCLDGE  600
MYSQILDTAK PRHDPDRHHV SFFAYRQLPS FLLQRDVCFS ELGNFVKCMH DGSLIKIVVR  660
VRIIIAHQSG SSALDVLMQR LTVLCIRGVS TYPIKIIRSR YLTTVIAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-112	232	650	11	442	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120049	0.0	AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622759.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0E0G0K6	0.0	A0A0E0G0K6_ORYNI; Beta-amylase
STRING	ONIVA02G02260.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]