PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G02790.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 716aa MW: 75591.8 Da PI: 6.4552

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G02790.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.5e-28	478	529	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+++le+l+k+Fs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++ ONIVA02G02790.2 478 AEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKV 529 5899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	463	549	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	481	529	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-18	603	675	No hit	No description
PROSITE profile	PS51745	15.378	608	683	IPR000270	PB1 domain
SMART	SM00666	3.5E-16	608	704	IPR000270	PB1 domain
Pfam	PF00564	1.4E-11	609	681	IPR000270	PB1 domain
CDD	cd06407	4.32E-34	609	691	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-21	609	675	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MERVVGDFNL LLQRGGAAGE RGSEGGGGGS PGTEEAAAVA VKQRIARALR LYKEAAGDGG 60 GGWMVQVWAP ARDGARRVLA TRGQPFVLAS QCHRLFQYRT VSLTRVFPVG GAAAADEQGL 120 PARAFDATAP EWTPNVQCYG SGEYARISYA LIYDIQGSLA LPILDPDDAS SPLAVFELVT 180 TAPLLRVSGE VANLCNALRA VSLRGAGICN RAAEIVHRDA TRAAMAEVSE LLITVCEAHK 240 LPLAQTWVRC RSCGGGGEDT EKAALTTAGA PFHLAAGADA RGFRDACVEH HLQRGQGLVG 300 TAARAPGGGR LCADVARCSK DDYPLAHYAG MYGLAGCLVL RAELSAAAMA DAAAATAGDE 360 EDCVVLELFL PPDCTGVAEQ KAAVDAVSAT IKQCSGNLKA IVISNLDDLF LDTMADGDHQ 420 LRHEMDDLGD DQRCSDEEDL QLLENTNIGE LNIHNADQIR NEDPTSQVGK NKTKRGKAEK 480 SVTLEELQKH FSGSLKDAAR SLGVCPTTMK RICRQHGIPR WPFRKISKVN RSLDKMKRVM 540 ESVNCSPSPP VAMPAHPALL LPPPPPPPRP CLSSTVGETS SHGSCQAPPS HAKTALRKPP 600 RCGNGDGVVT IKASHRGDII RFRVPCSASV AAVKAEVAKR LSLDAGAFDV KYLDDDHQWV 660 LLSCDADFQE CLDVVPALPS MPVTGRSGSG AAAPVVVRLM VQEVADNIGS SCASSD

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MERVVGDFNL LLQRGGAAGE RGSEGGGGGS PGTEEAAAVA VKQRIARALR LYKEAAGDGG  60
GGWMVQVWAP ARDGARRVLA TRGQPFVLAS QCHRLFQYRT VSLTRVFPVG GAAAADEQGL  120
PARAFDATAP EWTPNVQCYG SGEYARISYA LIYDIQGSLA LPILDPDDAS SPLAVFELVT  180
TAPLLRVSGE VANLCNALRA VSLRGAGICN RAAEIVHRDA TRAAMAEVSE LLITVCEAHK  240
LPLAQTWVRC RSCGGGGEDT EKAALTTAGA PFHLAAGADA RGFRDACVEH HLQRGQGLVG  300
TAARAPGGGR LCADVARCSK DDYPLAHYAG MYGLAGCLVL RAELSAAAMA DAAAATAGDE  360
EDCVVLELFL PPDCTGVAEQ KAAVDAVSAT IKQCSGNLKA IVISNLDDLF LDTMADGDHQ  420
LRHEMDDLGD DQRCSDEEDL QLLENTNIGE LNIHNADQIR NEDPTSQVGK NKTKRGKAEK  480
SVTLEELQKH FSGSLKDAAR SLGVCPTTMK RICRQHGIPR WPFRKISKVN RSLDKMKRVM  540
ESVNCSPSPP VAMPAHPALL LPPPPPPPRP CLSSTVGETS SHGSCQAPPS HAKTALRKPP  600
RCGNGDGVVT IKASHRGDII RFRVPCSASV AAVKAEVAKR LSLDAGAFDV KYLDDDHQWV  660
LLSCDADFQE CLDVVPALPS MPVTGRSGSG AAAPVVVRLM VQEVADNIGS SCASSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627710.1	0.0	protein NLP3-like
TrEMBL	A0A0E0G0T4	0.0	A0A0E0G0T4_ORYNI; Uncharacterized protein
STRING	ONIVA02G02790.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-109	Nin-like family protein