PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G02790.3

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 724aa MW: 76470.8 Da PI: 6.4544

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G02790.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.5e-28	486	537	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+++le+l+k+Fs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++ ONIVA02G02790.3 486 AEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKV 537 5899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	471	557	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	489	537	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-18	611	683	No hit	No description
PROSITE profile	PS51745	15.378	616	691	IPR000270	PB1 domain
SMART	SM00666	3.5E-16	616	712	IPR000270	PB1 domain
Pfam	PF00564	1.4E-11	617	689	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.5E-21	617	683	No hit	No description
CDD	cd06407	4.33E-34	617	699	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence Send to blast
MERVVGDFNL LLQRGGAAGE RGSEGGGGGS PGTEEAAAVA VKQRIARALR LYKEAAGDGG 60 GGWMVQVWAP ARDGARRVLA TRGQPFVLAS QCHRLFQYRT VSLTRVFPVG GAAAADEQGL 120 PARAFDATAP EWTPNVQCYG SGEYARISYA LIYDIQGSLA LPILDPDDAS SPLAVFELVT 180 TAPLLRVSGE VANLCNALRA VSLRGAGICN RAAECYSLAV NQIVHRDATR AAMAEVSELL 240 ITVCEAHKLP LAQTWVRCRS CGGGGEDTEK AALTTAGAPF HLAAGADARG FRDACVEHHL 300 QRGQGLVGTA ARAPGGGRLC ADVARCSKDD YPLAHYAGMY GLAGCLVLRA ELSAAAMADA 360 AAATAGDEED CVVLELFLPP DCTGVAEQKA AVDAVSATIK QCSGNLKAIV ISNLDDLFLD 420 TMADGDHQLR HEMDDLGDDQ RCSDEEDLQL LENTNIGELN IHNADQIRNE DPTSQVGKNK 480 TKRGKAEKSV TLEELQKHFS GSLKDAARSL GVCPTTMKRI CRQHGIPRWP FRKISKVNRS 540 LDKMKRVMES VNCSPSPPVA MPAHPALLLP PPPPPPRPCL SSTVGETSSH GSCQAPPSHA 600 KTALRKPPRC GNGDGVVTIK ASHRGDIIRF RVPCSASVAA VKAEVAKRLS LDAGAFDVKY 660 LDDDHQWVLL SCDADFQECL DVVPALPSMP VTGRSGSGAA APVVVRLMVQ EVADNIGSSC 720 ASSD

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence Send to blast

MERVVGDFNL LLQRGGAAGE RGSEGGGGGS PGTEEAAAVA VKQRIARALR LYKEAAGDGG  60
GGWMVQVWAP ARDGARRVLA TRGQPFVLAS QCHRLFQYRT VSLTRVFPVG GAAAADEQGL  120
PARAFDATAP EWTPNVQCYG SGEYARISYA LIYDIQGSLA LPILDPDDAS SPLAVFELVT  180
TAPLLRVSGE VANLCNALRA VSLRGAGICN RAAECYSLAV NQIVHRDATR AAMAEVSELL  240
ITVCEAHKLP LAQTWVRCRS CGGGGEDTEK AALTTAGAPF HLAAGADARG FRDACVEHHL  300
QRGQGLVGTA ARAPGGGRLC ADVARCSKDD YPLAHYAGMY GLAGCLVLRA ELSAAAMADA  360
AAATAGDEED CVVLELFLPP DCTGVAEQKA AVDAVSATIK QCSGNLKAIV ISNLDDLFLD  420
TMADGDHQLR HEMDDLGDDQ RCSDEEDLQL LENTNIGELN IHNADQIRNE DPTSQVGKNK  480
TKRGKAEKSV TLEELQKHFS GSLKDAARSL GVCPTTMKRI CRQHGIPRWP FRKISKVNRS  540
LDKMKRVMES VNCSPSPPVA MPAHPALLLP PPPPPPRPCL SSTVGETSSH GSCQAPPSHA  600
KTALRKPPRC GNGDGVVTIK ASHRGDIIRF RVPCSASVAA VKAEVAKRLS LDAGAFDVKY  660
LDDDHQWVLL SCDADFQECL DVVPALPSMP VTGRSGSGAA APVVVRLMVQ EVADNIGSSC  720
ASSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627710.1	0.0	protein NLP3-like
TrEMBL	A0A0E0G0T5	0.0	A0A0E0G0T5_ORYNI; Uncharacterized protein
STRING	ONIVA02G02790.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-107	Nin-like family protein