PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G03520.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 589aa MW: 63857.6 Da PI: 8.1674

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G03520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	4	52	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +WTt +l+ +a + + ++ +W +ar +g g+t++++k ++ k+l ONIVA02G03520.1 4 SWTTKQNKLFERALATYDKDtpgRWQNVARAVGGGKTAEEVKRHYDKLL 52 7********************************************8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.3E-8	1	54	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	10.589	1	50	IPR017884	SANT domain
SuperFamily	SSF46689	1.04E-10	3	59	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-6	4	52	IPR001005	SANT/Myb domain
CDD	cd00167	1.64E-5	4	52	No hit	No description
Hamap	MF_01346	48.511	83	589	IPR005294	ATPase, F1 complex, alpha subunit
Gene3D	G3DSA:2.40.30.20	2.8E-38	86	175	IPR023366	ATP synthase subunit alpha-like domain
TIGRFAMs	TIGR00962	1.5E-235	86	582	IPR005294	ATPase, F1 complex, alpha subunit
SuperFamily	SSF50615	5.49E-28	92	176	IPR004100	ATPase, F1 complex alpha/beta subunit, N-terminal domain
Pfam	PF02874	6.4E-19	108	174	IPR004100	ATPase, F1 complex alpha/beta subunit, N-terminal domain
Gene3D	G3DSA:3.40.50.300	1.1E-121	176	462	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd01132	0	176	458	IPR033732	ATPase, F1 complex, alpha subunit nucleotide-binding domain
SuperFamily	SSF52540	3.33E-97	178	461	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00006	2.3E-72	231	455	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain
PROSITE pattern	PS00152	0	446	455	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site
Pfam	PF00306	5.8E-39	462	574	IPR000793	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
Gene3D	G3DSA:1.20.150.20	8.1E-47	464	585	No hit	No description
SuperFamily	SSF47917	2.15E-37	464	575	IPR000793	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015986	Biological Process	ATP synthesis coupled proton transport
GO:0015991	Biological Process	ATP hydrolysis coupled proton transport
GO:0005730	Cellular Component	nucleolus
GO:0005739	Cellular Component	mitochondrion
GO:0005774	Cellular Component	vacuolar membrane
GO:0009941	Cellular Component	chloroplast envelope
GO:0045261	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0008266	Molecular Function	poly(U) RNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0046933	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MSSSWTTKQN KLFERALATY DKDTPGRWQN VARAVGGGKT AEEVKRHYDK LLQDLHHIES 60 AGRQGSQYGG SSSSKSKGGS SSGEQRAAEL TTLLESRMTN FYTNFQVDEI GRVVSVGDGI 120 ARVYGLNEIQ AGEMVEFASG VKGIALNLEN ENVGIVVFGS DTAIKEGDLV KRTGSIVDVP 180 AGKAMLGRVV DALGVPIDGK GALSDHERRR VEVKAPGIIE RKSVHEPMQT GLKAVDSLVP 240 IGRGQRELII GDRQTGKTAI AIDTILNQKQ MNSRGTNESE TLYCVYVAIG QKRSTVAQLV 300 QILSEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA 360 YRQMSLLLRR PPGREAFPGD VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGGVSAY 420 IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY 480 REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYEPLP IEKQIVVIYA AVNGFCDRMP 540 LDRISQYEKA ILSTINPELL KSFNEKGGLT NERKIEPDAS LKQTAKEIN

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MSSSWTTKQN KLFERALATY DKDTPGRWQN VARAVGGGKT AEEVKRHYDK LLQDLHHIES  60
AGRQGSQYGG SSSSKSKGGS SSGEQRAAEL TTLLESRMTN FYTNFQVDEI GRVVSVGDGI  120
ARVYGLNEIQ AGEMVEFASG VKGIALNLEN ENVGIVVFGS DTAIKEGDLV KRTGSIVDVP  180
AGKAMLGRVV DALGVPIDGK GALSDHERRR VEVKAPGIIE RKSVHEPMQT GLKAVDSLVP  240
IGRGQRELII GDRQTGKTAI AIDTILNQKQ MNSRGTNESE TLYCVYVAIG QKRSTVAQLV  300
QILSEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA  360
YRQMSLLLRR PPGREAFPGD VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGGVSAY  420
IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY  480
REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYEPLP IEKQIVVIYA AVNGFCDRMP  540
LDRISQYEKA ILSTINPELL KSFNEKGGLT NERKIEPDAS LKQTAKEIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jiz_B	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jiz_C	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jiz_H	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jiz_I	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jiz_J	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj1_A	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj1_B	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj1_C	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj1_H	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj1_I	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj1_J	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj2_A	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj2_B	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj2_C	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj2_H	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj2_I	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2jj2_J	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2v7q_A	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2v7q_B	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
2v7q_C	0.0	88	583	6	499	ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites (By similarity). {ECO:0000250}.
UniProt	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites (By similarity). {ECO:0000250}.
UniProt	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP011076	0.0	AP011076.1 Oryza rufipogon mitochondrial DNA, complete genome.
GenBank	AP011077	0.0	AP011077.1 Oryza sativa Indica Group mitochondrial DNA, complete genome, cultivar: Lead rice.
GenBank	AP012527	0.0	AP012527.1 Oryza rufipogon mitochondrial DNA, complete genome, strain: RT98C.
GenBank	AP012528	0.0	AP012528.1 Oryza rufipogon mitochondrial DNA, complete genome, strain: RT102C.
GenBank	BA000029	0.0	BA000029.3 Oryza sativa Japonica Group mitochondrial DNA, complete genome.
GenBank	DQ167399	0.0	DQ167399.1 Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome.
GenBank	DQ167400	0.0	DQ167400.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome.
GenBank	DQ167807	0.0	DQ167807.1 Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome.
GenBank	JF281153	0.0	JF281153.1 Oryza sativa Indica Group mitochondrion, complete genome.
GenBank	JF281154	0.0	JF281154.1 Oryza sativa Indica Group strain WA-CMS mitochondrion, complete genome.
GenBank	JN861111	0.0	JN861111.1 Oryza sativa Indica Group cultivar Hassawi mitochondrion, complete genome.
GenBank	JN861112	0.0	JN861112.1 Oryza sativa Indica Group mitochondrion, complete genome.
GenBank	X51422	0.0	X51422.1 Rice mitochondrial atpA gene for F1-ATPase alpha subunit.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	YP_003433863.1	0.0	ATP synthase F0 subunit 1 (mitochondrion)
Refseq	YP_514682.1	0.0	ATP synthase F0 subunit 1 (mitochondrion)
Swissprot	P0C520	0.0	ATPAM_ORYSA; ATP synthase subunit alpha, mitochondrial
Swissprot	P0C521	0.0	ATPAM_ORYSI; ATP synthase subunit alpha, mitochondrial
Swissprot	P0C522	0.0	ATPAM_ORYSJ; ATP synthase subunit alpha, mitochondrial
TrEMBL	A0A0E0G138	0.0	A0A0E0G138_ORYNI; ATP synthase subunit alpha
STRING	ONIVA02G03520.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	5e-23	RAD-like 6

Publications ? help Back to Top
Notsu Y, et al. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet. Genomics, 2002. 268(4): p. 434-45 [PMID:12471441] Tian X,Zheng J,Hu S,Yu J The rice mitochondrial genomes and their variations. Plant Physiol., 2006. 140(2): p. 401-10 [PMID:16384910] Kadowaki K,Kazama S,Suzuki T Nucleotide sequence of the F1-ATPase alpha subunit gene from rice mitochondria. Nucleic Acids Res., 1990. 18(5): p. 1302 [PMID:2138730]