PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G04420.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 214aa    MW: 21663.9 Da    PI: 6.9095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G04420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182373256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g+
  ONIVA02G04420.1 23 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRGA 73
                     69*******.7*********83...36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-212382IPR016177DNA-binding domain
CDDcd000189.97E-152379No hitNo description
SMARTSM003801.3E-342386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-292381IPR001471AP2/ERF domain
PROSITE profilePS5103222.0762380IPR001471AP2/ERF domain
PfamPF008477.8E-122372IPR001471AP2/ERF domain
PRINTSPR003679.3E-82435IPR001471AP2/ERF domain
PRINTSPR003679.3E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRRARLPPAA AMAGGGGGEG EVRYRGVRRR PSGRYAAEIR DPAKKTPIWL GTFDSAEAAA  60
RAYDAAARSL RGAAARTNFP PSTSSSAPPP PPPQHQPPQH LPPAAAAATS SHSSTVESWG  120
VTVAAAAASA GALGLPPPRN GGSNPAADED CRSYCGSSSS VLCEDGASGA GDEAAAPRCS  180
PLPFDLNLPA SSPSAAAAAE ADEMDWRCDT LLHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191284176Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875590.0AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence.
GenBankAP0048430.0AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11.
GenBankAP0048710.0AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623823.11e-145ethylene-responsive transcription factor 3
TrEMBLA0A0E0G1J01e-146A0A0E0G1J0_ORYNI; Uncharacterized protein
STRINGONIVA02G04420.11e-147(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347