PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G10570.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 188aa    MW: 19304.5 Da    PI: 9.7918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G10570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.3e-071971555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55
                      +  Er RR+++N+ ++ L +l+ +a+  ++ +   +  + L  A eYI++ q
  ONIVA02G10570.1 19 RKTTERIRREQMNKLYSDLDSLVGSAPptGGAAAATTRPDRLGVAAEYIRQKQ 71
                     6789*********************555666666699999*********9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-61684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-81784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDIPPPSAGG GGGGGKTDRK TTERIRREQM NKLYSDLDSL VGSAPPTGGA AAATTRPDRL  60
GVAAEYIRQK QERVDMLREK KRELTGGGGG GSSSSSGAGA ATAAAPEVEV QHLGSGLHAI  120
LFTGAPPTDG ASFHRAIRAV EDAGGQVQNA HFSVAGAKAV YTIHAMIGDG YGGIERVVQR  180
LKEAIRSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057560.0AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688523.11e-71PREDICTED: uncharacterized protein LOC107303503
TrEMBLA0A0E0G3V91e-131A0A0E0G3V9_ORYNI; Uncharacterized protein
STRINGONIVA02G10570.11e-132(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-15bHLH family protein