PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G13200.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 475aa    MW: 52422.6 Da    PI: 5.9187
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G13200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.7e-1183120745
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       Ede l++ ++ +G ++W+t+ar ++ gR + qc+ rw 
  ONIVA02G13200.1  83 HEDESLIQMINIYGHNNWETVARAIP-GRNAQQCRVRWK 120
                      69************************.***********6 PP
2Myb_DNA-binding361.6e-11129174148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +++W+ eE+++l+++ + +G++ W + a+++  gRt   +k++w++++
  ONIVA02G13200.1 129 KQAWSREEELRLIHVQQIFGNK-WCRMAEHFT-GRTSAAIKEHWRDLR 174
                      799*******************.********9.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-1683132IPR009057Homeodomain-like
SuperFamilySSF466896.97E-2183170IPR009057Homeodomain-like
SMARTSM007171.7E-583125IPR001005SANT/Myb domain
PROSITE profilePS500908.94384123IPR017877Myb-like domain
PfamPF139215.4E-1284140No hitNo description
CDDcd001673.29E-1084123No hitNo description
PROSITE profilePS5129417.694124178IPR017930Myb domain
SMARTSM007171.0E-9128176IPR001005SANT/Myb domain
CDDcd001673.02E-8131173No hitNo description
Gene3DG3DSA:1.10.10.602.6E-14133173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MASRAVEGEG EGEEEGEGKG NLANAPEDSH KHCQGEELEA GQSCKINYQD IMDKCGIEIS  60
EKRRRRWSTK ESCLDFYFII LLHEDESLIQ MINIYGHNNW ETVARAIPGR NAQQCRVRWK  120
FNLDPAISKQ AWSREEELRL IHVQQIFGNK WCRMAEHFTG RTSAAIKEHW RDLRPSLKSK  180
EGVSSKCDGS SGDNQLLSDL RASLKSKGAS SKCDGSSGDN QLLSDLRASL KSKGASSKCD  240
GSSDENKLLS DLRACLKSKQ GASSKCDGSS GENQLLSDLQ ASLMSKQRTS SKYKQGASSK  300
SKQGTSSKSK QGFIDLCENT DTSEGESSEL ICTERPDPDS GEASQRIRDR LNWRKRARKK  360
LVFLSSPVEL KVSAVAESER HLQESKEMSP EVNIVSPPAV LQGFSPEVPS VCEKIVEPPL  420
ADFNQAKNVC SLETSSDPCT LEQHLANVSD LLDMSYIDGL MIIPPAGCPY DGDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-188417014100B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4957890.0AJ495789.1 Oryza sativa Japonica Group partial mRNA for MYB20 protein.
GenBankAK1209130.0AK120913.1 Oryza sativa Japonica Group cDNA clone:J023034G08, full insert sequence.
GenBankAP0050070.0AP005007.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0521F09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.10.0transcription factor MYB64
TrEMBLA0A0E0G4T00.0A0A0E0G4T0_ORYNI; Uncharacterized protein
STRINGONIVA02G13200.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165241011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.14e-26myb domain protein 3r-4