PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G16090.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 131aa    MW: 15010.3 Da    PI: 10.2273
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G16090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.4e-1036128394
                      EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       +++++  +k++ + ++k+f  ++      kk++++++++   s+ ++ + +    + +r+ l++GW +F  +ng+++g +++F+++++++ + 
  ONIVA02G16090.1  36 VTTINPTFMKQDKVHFSKQFSMTYialiVRKKTSQIEVRIPGHSSTTMVLHH---STEKRFNLKSGWTHFPTSNGIQVGTICIFHFHQTNQLQA 126
                      67789999999*********99999999666778888888887777777777...5666899***********************988777666 PP

                      EE CS
               B3  93 vv 94 
                      ++
  ONIVA02G16090.1 127 TI 128
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1428125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-1129128IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-835128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MKCASAPGRD INLSTELKDY IKDIAQFLHP SNKFYVTTIN PTFMKQDKVH FSKQFSMTYI  60
ALIVRKKTSQ IEVRIPGHSS TTMVLHHSTE KRFNLKSGWT HFPTSNGIQV GTICIFHFHQ  120
TNQLQATIDV L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1033470.0AK103347.1 Oryza sativa Japonica Group cDNA clone:J033126D19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876684.12e-17putative B3 domain-containing protein Os10g0158600
TrEMBLA0A0E0G5U92e-93A0A0E0G5U9_ORYNI; Uncharacterized protein
STRINGONIVA02G16090.13e-94(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2655622