PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G18870.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 124aa    MW: 14040.7 Da    PI: 6.5375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G18870.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12242451
              AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                     +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  ONIVA02G18870.2  2 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 42
                     9**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-6244IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-8245IPR016177DNA-binding domain
SMARTSM003801.1E-4257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-7347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRGVYFKNMK WQAAIKVDKK QIHLGTVGTQ EEAARLYDRA AFMCGREPNF ELSEEEKKEL  60
QNYTWKDFLD MTRDTITSKK QRKVGLIRRN KTDSLVGQSD GDTEMINGGG SSHSEDGDAE  120
TSAS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.12e-88ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.12e-88ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP98e-42ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0E0G6W51e-87A0A0E0G6W5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0G6W63e-87A0A0E0G6W6_ORYNI; Uncharacterized protein
STRINGOGLUM02G17700.15e-88(Oryza glumipatula)
STRINGORUFI02G18290.15e-88(Oryza rufipogon)
STRINGOS02T0499000-019e-88(Oryza sativa)
STRINGONIVA02G18870.12e-87(Oryza nivara)
STRINGORGLA02G0152600.19e-88(Oryza glaberrima)
STRINGOBART02G17450.15e-88(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-44ERF family protein