PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G18870.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 212aa    MW: 24268.3 Da    PI: 8.6427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G18870.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-1289130351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  ONIVA02G18870.3  89 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 130
                      79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.26964143IPR001471AP2/ERF domain
PfamPF008471.6E-688131IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-888133IPR016177DNA-binding domain
SMARTSM003806.1E-588145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-791135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MMMSRKDSLP VDFPKPSDNE NSVEVAHPNI KPFSVHPLPL TKNSDVLLES SNGSDSLKEE  60
KNHYYPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI HLGTVGTQEE  120
AARLYDRAAF MCGREPNFEL SEEEKKELQN YTWKDFLDMT RDTITSKKQR KVGLIRRNKT  180
DSLVGQSDGD TEMINGGGSS HSEDGDAETS AS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.11e-156ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.11e-156ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0E0G6W61e-158A0A0E0G6W6_ORYNI; Uncharacterized protein
STRINGOGLUM02G17700.11e-157(Oryza glumipatula)
STRINGORUFI02G18290.11e-157(Oryza rufipogon)
STRINGOBART02G17450.11e-157(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.25e-47ERF family protein