PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G19000.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 100aa    MW: 10887.6 Da    PI: 10.5932
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G19000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS76.64.5e-24399277374
             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                      ++s+ ++k+Er++++++i+++v ++      +++ ++ Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ +L sv
  ONIVA02G19000.1   3 TDSDVAAKIERFWVQPKIQECVRAAVGV-GGDKTAASAWRATLVSAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRAGSLFLHWQRGELASV 95 
                      6789999***************988776.6888899********************************************************** PP

             GRAS 371 SaWr 374
                      SaWr
  ONIVA02G19000.1  96 SAWR 99 
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.912179IPR005202Transcription factor GRAS
PfamPF035141.6E-21399IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MGTDSDVAAK IERFWVQPKI QECVRAAVGV GGDKTAASAW RATLVSAGFV PVQVSSMAEA  60
QAESLLKKLP VRGFRLERRA GSLFLHWQRG ELASVSAWRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186731e-166AC118673.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence.
GenBankAC1254111e-166AC125411.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence.
GenBankAC2139081e-166AC213908.1 Oryza glaberrima clone OG_BBa0062I05, complete sequence.
GenBankAF4858111e-166AF485811.1 Oryza sativa BAC OSJNa0049F05, complete sequence.
GenBankAK1193241e-166AK119324.1 Oryza sativa Japonica Group cDNA clone:001-131-A10, full insert sequence.
GenBankAP0149591e-166AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-166CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629082.24e-64scarecrow-like protein 6
TrEMBLA0A0D3FCN76e-63A0A0D3FCN7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G6X73e-65A0A0E0G6X7_ORYNI; Uncharacterized protein
TrEMBLQ0DW057e-63Q0DW05_ORYSJ; Os03g0103400 protein (Fragment)
STRINGOS03T0103400-011e-63(Oryza sativa)
STRINGONIVA02G19000.15e-66(Oryza nivara)
STRINGOBART03G00350.11e-63(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5463022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.15e-24GRAS family protein