PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G21900.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 148aa    MW: 16868.4 Da    PI: 6.9312
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G21900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.44.7e-0870105138
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38 
                      +fY+ YA++vGFs+r+ ++kk   +g +  + f C ++
  ONIVA02G21900.1  70 EFYECYAHRVGFSIRIGQHKKV--DGVVLYKCFLCANN 105
                      6*****************9998..9**********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-570104IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSMARRLEFD DVHSDAESVT TGVPHRRAQY IKPQKSTSIP FCGSYFVPEC DDSVVPHIGM  60
TFMDVESAKE FYECYAHRVG FSIRIGQHKK VDGVVLYKCF LCANNSLLRF GIGHDGHPLS  120
VLDLAMELYH CEKVFLNISN MVREKVYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-100CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640678.12e-50protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0E0G7Y41e-107A0A0E0G7Y4_ORYNI; Uncharacterized protein
STRINGONIVA02G21900.11e-107(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15006915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-09FAR1-related sequence 12