PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G22590.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 679aa    MW: 74818.1 Da    PI: 6.3001
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G22590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-23129229198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + 
  ONIVA02G22590.1 129 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RG 218
                      99****************************986555545..8************************************************..44 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++el+v+v+r
  ONIVA02G22590.1 219 ENGELRVGVRR 229
                      9999*****97 PP
2Auxin_resp111.49e-37255337183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha+st++ F+v+Y+Pr+s+seFvv+++k+++a ++k+svGmRfkm+fe+++++err+sGt++gv  ++++ W nS WrsLk
  ONIVA02G22590.1 255 ASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWANSDWRSLK 337
                      789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-44118258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-41124244IPR015300DNA-binding pseudobarrel domain
CDDcd100177.78E-22127229No hitNo description
SMARTSM010191.5E-22129231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462129231IPR003340B3 DNA binding domain
PfamPF023625.4E-21129229IPR003340B3 DNA binding domain
PfamPF065071.9E-34255337IPR010525Auxin response factor
PfamPF023095.1E-13536640IPR033389AUX/IAA domain
PROSITE profilePS5174525.456549642IPR000270PB1 domain
SuperFamilySSF542776.54E-12551628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAGSVVAAAA AAGGGGTGSS CDALYRELWH ACAGPLVTVP RQGELVYYFP QGHMEQLEAS  60
TDQQLDQHLP LFNLPSKILC KVVNVELRAE TDSDEVYAQI MLQPEADQNE LTSPKPEPHE  120
PEKCNVHSFC KTLTASDTST HGGFSVLRRH AEECLPPLDM TQNPPWQELV ARDLHGNEWH  180
FRHIFRGQPR RHLLTTGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRL MRQLNNMPSS  240
VISSHSMHLG VLATASHAIS TGTLFSVFYK PRTSQSEFVV SANKYLEAKN SKISVGMRFK  300
MRFEGDEAPE RRFSGTIIGV GSMSTSPWAN SDWRSLKVQW DEPSVVPRPD RVSPWELEPL  360
AVSNSQPSPQ PPARNKRARP PASSSIAPEL PPVFGLWKSS AESTQGFSFS GLQRTQELYP  420
SSPNPIFSTS LNVGFSTKNE PSALSNKHFY WPMRETRADS YSASISKVPS EKKQEPSSAG  480
CRLFGIEISS AVEATSPLAA VSGVGQDQPA ASVDAESDQL SQPSHANKSD APAASSEPSP  540
HETQSRQVRS CTKVIMQGMA VGRAVDLTRL HGYDDLRCKL EEMFDIQGEL SASLKKWKVV  600
YTDDEDDMML VGDDPWPEFC SMVKRIYIYT YEEAKQLTPK SKLPIIGDAI KPNPNKQSPE  660
SDMPHSDLDS TAPVTDKDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.063601355Auxin response factor 1
4ldw_A0.063601355Auxin response factor 1
4ldw_B0.063601355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0700260.0AK070026.1 Oryza sativa Japonica Group cDNA clone:J023036G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625501.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A0E0G8820.0A0A0E0G882_ORYNI; Auxin response factor
STRINGONIVA02G22590.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]