PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G29380.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 688aa    MW: 72017.6 Da    PI: 6.078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G29380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.82.4e-323534903144
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  + g+p+ R a+y++eAL   la+  s+  ++  +s+    +++ +laa+k fs++sP+l+f+++
  ONIVA02G29380.1 353 DELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQFTNF 441
                      7899*************************************************..444444555555...499********************* PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+ g+ +lRi
  ONIVA02G29380.1 442 TATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRR-GAGELRI 490
                      ***********998899***********************96.5567776 PP
2GRAS129.14.9e-40485675169374
             GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                      A el++pfefn++   +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++  d+ + +F ++fl+++
  ONIVA02G29380.1 485 AGELRIPFEFNAV---SLDAFNPAELISSSgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCF 568
                      889*********8...99*****999777779********9777665...44....556*********************************** PP

             GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                      + ++ l+dsl+a  + +++ + k+Er+l++++++++v  ++++     +++  Wr+ + + GFkpv+ s+ a++qa++ll++v+++g++ve++ 
  ONIVA02G29380.1 569 QSCVFLLDSLDAA-GIDADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSVFAATGFKPVQPSNLAEAQADCLLKRVQVRGFHVEKRG 656
                      **********888.7899*******************999888.....78899***************************************** PP

             GRAS 356 gslvlgWkdrpLvsvSaWr 374
                      ++l+l+W++ +Lvs+S+Wr
  ONIVA02G29380.1 657 AALTLYWQRGELVSISSWR 675
                      ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.325325655IPR005202Transcription factor GRAS
PfamPF035141.7E-37485675IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPPYSTSTLS  60
SSLGGGSADS TGVAAVSESS TAAAGATKWG APGEHGGGGK EEWGGGCELP PIPGALDVGL  120
VGGEGWDATA TLGNAAGPDQ SFLNWIIGAA GDLEQPGPPL PVLQQPLIDN AGFGIPAVDT  180
MGFSLDHPLS GVASDLSSSG AHTATGGGGK ASLGFGLFSP EATSLEQPPP SMLFHEGIDT  240
KPPLLGAQPQ FLLNHYQPQP PNPAAALFMP LPPFPEHNHQ SPHLQPPLKR HHAIPDDLYL  300
ARNQQQSSAV APGLAYSPPL HGPAPFQLHP SPPPIRGAMK STAAEAAQQQ LLDELAAAAK  360
ATEAGNSVGA REILARLNQQ LPQLGKPFLR SASYLKEALL LALADSHHGS SGVTSPLDVA  420
LKLAAYKSFS DLSPVLQFTN FTATQALLDE IGGMATSCIH VIDFDLGVGG QWASFLQELA  480
HRRGAGELRI PFEFNAVSLD AFNPAELISS SGDEVVAVSL PVGCSARAPP LPAILRLVKQ  540
LCPKVVVAID HGGDRADLPF SQHFLNCFQS CVFLLDSLDA AGIDADSACK IERFLIQPRV  600
EDAVIGRHKA QKAIAWRSVF AATGFKPVQP SNLAEAQADC LLKRVQVRGF HVEKRGAALT  660
LYWQRGELVS ISSWRLEYDM QSNYRCRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-1535967427378Protein SCARECROW
5b3h_A7e-1535967426377Protein SCARECROW
5b3h_D7e-1535967426377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105GGKEEWGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627415.10.0scarecrow-like protein 6
TrEMBLA0A0E0GAS80.0A0A0E0GAS8_ORYNI; Uncharacterized protein
STRINGONIVA02G29380.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-76GRAS family protein