PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G30630.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 261aa    MW: 27002.8 Da    PI: 5.8317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G30630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1671119356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g+
  ONIVA02G30630.1  71 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 119
                      9***9.55.6*********94....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-1870126IPR016177DNA-binding domain
SMARTSM003801.1E-2670132IPR001471AP2/ERF domain
PROSITE profilePS5103220.17870126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2671126IPR001471AP2/ERF domain
PfamPF008474.4E-971118IPR001471AP2/ERF domain
CDDcd000182.87E-1771126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MADLTEHPSP TAPPQVQTAG LPVAASPGPA SPHSPSEQGD KTAPGAATAS TMTTASSGEP  60
SPRSSGKHAF YRGIRCRSGK WVSEIREPRK ARRIWLGTYP TAEMAAAAYD VAARALRGAD  120
AVLNFPGATA SRPVPASASP ADIRAAAAAA AAAAAHLERP HGPTGTAYPA TAAAEHHHQQ  180
QQQQYGSGSP AADDVSGYPP MEGGIGNDDF MDEEAIFELP QLLRNMAAGM MMSPPRLSPT  240
TSDVSPEPSE AGESLWSYRD P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13671261172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2431460.0AK243146.1 Oryza sativa Japonica Group cDNA, clone: J100032D11, full insert sequence.
GenBankAP0057750.0AP005775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04.
GenBankAP0060600.0AP006060.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0135D07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624062.10.0ethylene-responsive transcription factor ERF027
SwissprotQ9FJ904e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0E0GB900.0A0A0E0GB90_ORYNI; Uncharacterized protein
STRINGONIVA02G30630.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-20ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]