PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G30970.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 209aa    MW: 22052.1 Da    PI: 9.8369
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G30970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.21.8e-25133177145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      +++pgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+
  ONIVA02G30970.1 133 EPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 177
                      699***************************************997 PP
2QLQ52.31.7e-1868103237
              QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      a+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  ONIVA02G30970.1  68 ALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103
                      79*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-567103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.22568103IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.7E-1168102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.548133177IPR014977WRC domain
PfamPF088794.7E-21134176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGEEKEADSP QPPSKLPRLS GADPNAGVVT MAAPPPPVGL GLGLGLGGDS RGERDVEASA  60
AAAHKATALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVASSSF GPHRFPSLMG  120
LGNLCFDYRS SMEPDPGRCR RTDGKKWRCS RDVVPGHKYC ERHVHRGRGR SRKPVEASAA  180
ATPANNGGGG GIVFSPTSVL LAHGAARAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347610.0CT834761.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033I10, full insert sequence.
GenBankFJ5466940.0FJ546694.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 10 (GRF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624932.11e-150growth-regulating factor 10 isoform X2
SwissprotQ6EPP91e-127GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A0D9YWF41e-150A0A0D9YWF4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CPS51e-150A0A0E0CPS5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GBD21e-150A0A0E0GBD2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NJ791e-150A0A0E0NJ79_ORYRU; Uncharacterized protein
TrEMBLA2X8B11e-150A2X8B1_ORYSI; Uncharacterized protein
STRINGOGLUM02G28430.11e-151(Oryza glumipatula)
STRINGOMERI02G26250.11e-151(Oryza meridionalis)
STRINGORUFI02G29340.11e-151(Oryza rufipogon)
STRINGONIVA02G30970.11e-151(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.18e-37growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]