PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G33840.5
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 466aa    MW: 50867.9 Da    PI: 5.205
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G33840.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.5e-0763104540
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                       C+ ++e++   +C+++   lC +C  + H+       Ht++
  ONIVA02G33840.5  63 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 104
                      7*****************************657888888876 PP
2zf-B_box223.5e-07106148541
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 
                       C+++  +++   C + ++ lC++C  ++H g       H++++
  ONIVA02G33840.5 106 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 148
                      7*****************************.5588889998876 PP
3CCT64.23.9e-22409452144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  ONIVA02G33840.5 409 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 452
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-1259106IPR000315B-box-type zinc finger
PROSITE profilePS501199.95459106IPR000315B-box-type zinc finger
CDDcd000211.39E-763106No hitNo description
PROSITE profilePS501199.058102149IPR000315B-box-type zinc finger
CDDcd000211.19E-5106149No hitNo description
SMARTSM003360.24107149IPR000315B-box-type zinc finger
PROSITE profilePS5101715.408409451IPR010402CCT domain
PfamPF062038.5E-17409451IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MFNYKFVVLL LVTDFCFWLF AHQYPGRIPL NSTVEQKARK VAVLVALSAS GSAPVLYRTM  60
DALCDFCGEQ RSMVYCRSDA ASLCLSCDRN VHSANALSRR HTRTLLCDRC VGQPAAVRCL  120
EENTSLCQNC DWNGHGAASS AAGHKRQTIN CYSGCPSSAE LSRIWSFSMD IPTVAAEPNC  180
EEGINMMSIN DNDVNNHCGA PEDGRLLDIA STVLMSDLPT GDKFKPLIGS SSGDGMNLLP  240
LNSDQPAEPV STTPKAPCVT DKDMFNDGSV YGDFCVDDAD LTFENYEELF GTSHVQTEQL  300
FDDAGIDSYF EMKDVPADES NEQPKPVQPE CSNVASVDSG MSNPAARADS SHCIPGRQAI  360
SNISLSFSGL TGESSAGDFQ DCGVSSMILM GEPPWHPPGP ESSSAGGSRD NALTRYKEKK  420
KRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418422KKKRR
2418423KKKRRK
3419423KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
GenBankCT8322800.0CT832280.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228J16, full insert sequence.
GenBankCT8322820.0CT832282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878658.10.0zinc finger protein CONSTANS-LIKE 9 isoform X3
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0E0GCH50.0A0A0E0GCH5_ORYNI; Uncharacterized protein
STRINGONIVA02G33840.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-94CONSTANS-like 9