PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G36550.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 307aa    MW: 33507.4 Da    PI: 11.3369
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G36550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.6e-32134190158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+Rg+gGrF
  ONIVA02G36550.1 134 DGPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKTRKPYLHESRHRHAMKRARGTGGRF 190
                      57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-37132193IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.735133193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-24136158IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-28136190IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-24167190IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQSRGAAAEA TAGRSRGGCR RSEQQQLLRA AEAPREEARG SHASPLIVFL FLRLQRRTVD  60
GPMRSTLTFD NNHSVVPSQN IDYGQPMACI SYPYNDSGSG VWASYSSRSV FHSQIVGGGT  120
SPRVPLPSLE IADDGPIYVN PKQYHGILRR RQLRAKLEAQ NKLVKTRKPY LHESRHRHAM  180
KRARGTGGRF LNTKQLQLQQ QSHTTSTKTT TDSQNSSGSV HLRLGGGAIG DQTPFPFKAM  240
DSQANIKRAA ASASTFTVTS AAQKDDAFFD RHGHHLSSFS GHFGQASAQG GVGSMHNGSQ  300
QRVPAMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21134195263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174183RHRHAMKRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185740.0AK318574.1 Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623432.10.0nuclear transcription factor Y subunit A-4
TrEMBLA0A0E0GDJ10.0A0A0E0GDJ1_ORYNI; Uncharacterized protein
STRINGONIVA02G36550.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-30nuclear factor Y, subunit A5