PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G40650.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 328aa    MW: 34124.7 Da    PI: 8.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G40650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055118140123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  ONIVA02G40650.1 118 YECKTCNKCFPTFQALGGHRASH 140
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-11117142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-8117140No hitNo description
PROSITE profilePS5015710.097118145IPR007087Zinc finger, C2H2
SMARTSM003550.094118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-8211238No hitNo description
PfamPF139129.1E-13215239IPR007087Zinc finger, C2H2
SMARTSM003550.026216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349216238IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSVEDKHAGV VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP  60
APPPPPPPAQ PPVLAAPAPA PPPPQPPVVV VKSERYTSRK YTEAATTADG VRAGFYVYEC  120
KTCNKCFPTF QALGGHRASH KKPRLPGADD DNVNNVTNTN AIVVKSKPPL TTTTTPSAPS  180
PPPPQADAVV VPDVTTVLSL NNVAAAGSII NKLRVHECSI CGAEFGSGQA LGGHMRRHRP  240
LHAPPERAAT TAATTAATAT APDTKKEGST SINLELDLNL PAPSDEESVS PPPPPPPPVL  300
LALGGQFNDG KKPILQLTAS AALVGCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039890.0AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040260.0AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623775.11e-161zinc finger protein ZAT5
TrEMBLA0A0E0GF390.0A0A0E0GF39_ORYNI; Uncharacterized protein
STRINGONIVA02G40650.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-28C2H2 family protein