PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G02550.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 303aa    MW: 32520.9 Da    PI: 7.6702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G02550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64e-10121162550
              AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaar 50 
                      GV+++   grW++  rd       + r +lg+f ++eeA++a++a+ 
  ONIVA03G02550.1 121 GVYQRQ-PGRWAVDFRD----SqLKVRQWLGTFPSEEEARAAYDAFE 162
                      9**998.9******888....23459*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.115118179IPR001471AP2/ERF domain
SMARTSM003808.0E-4121168IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-9121166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-11121167IPR001471AP2/ERF domain
PfamPF008471.9E-6121162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVAFRRIRIY YSDPDATDSD SDSDSDSDSA DAGDHDISSR SSRTNAAARR KVIVISLSRK  60
KGRSSSQSGR HYRRRRSEIP AAAAKAVEAE DWPSSSDGMR RGAVAAARSA SAAAKKGSRG  120
GVYQRQPGRW AVDFRDSQLK VRQWLGTFPS EEEARAAYDA FEVQVRASLS CGGAGAVAPS  180
PARVKIQLPA PRRVFGRRKK TQTTTTTTES SSQATVSASP SSEAAALPSS SASAAMPPLL  240
NPPPFVVDPF LGEDDHLAAD DDRFGFGLAD LGHLPLPFLD DNDMDFKLSD SDDLSSLFDI  300
GFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15875RKKGRSSSQSGRHYRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875765.11e-131ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0GGG40.0A0A0E0GGG4_ORYNI; Uncharacterized protein
STRINGONIVA03G02550.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-07related to AP2 11