PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G03740.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1432aa    MW: 156787 Da    PI: 6.1286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G03740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0513221347123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F +k +L+ H+r+ +
  ONIVA03G03740.1 1322 FQCDieFCDMTFETKAELRAHQRNiC 1347
                       899999*****************877 PP
2zf-C2H212.60.0004113471369323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  ONIVA03G03740.1 1347 CTdeSCGKRFSSHKYLKRHQCVH 1369
                       77778***************998 PP
3zf-C2H213.70.0001814051431123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  ONIVA03G03740.1 1405 YKCSapDCGQSFRYVSDYSRHRKKfnH 1431
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023754.2E-133164IPR003349JmjN domain
SuperFamilySSF511971.79E-28212394No hitNo description
SMARTSM005588.5E-49229398IPR003347JmjC domain
PROSITE profilePS5118434.774232398IPR003347JmjC domain
PfamPF023732.9E-37262381IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.0E-413161344IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.53813221344IPR007087Zinc finger, C2H2
SMARTSM003551213221344IPR015880Zinc finger, C2H2-like
SMARTSM003552.313451369IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00613451374IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-613471381No hitNo description
PROSITE patternPS00028013471369IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-713511375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.78E-1113691425No hitNo description
PROSITE profilePS5015711.96713751404IPR007087Zinc finger, C2H2
SMARTSM003556.6E-413751399IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-1113761399IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013771399IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-1014001427IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36514051432IPR007087Zinc finger, C2H2
SMARTSM003550.1414051431IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014071431IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PSPAAASDSS IPPSSSSPPP ASAAVFTTRH  120
QELGNPRRGR PTPQVLKQVW QSGERYTLDQ FESKSRAFSK THLAGLHEPT ALAVESLFWK  180
ASADRPIYIE YANDVPGSGF AAPVQLQRKK KQKRETAPMD EWEKSSGWRL SNSPWNLQAI  240
ARAPGSLTRF MPDDVPGVTS PMVYIGMLFS WFAWHVEDHD LHSLNFLHTG APKTWYAVPG  300
DRAVELEEVI RVHGYGGNTD RIASLAVLGE KTTLMSPEVL IDNGVPCCRL VQYPGEFVVT  360
FPRAYHVGFS HGFNCGEAAN FATPQWLKFA KEAAVRRAVM NYLPMLSHQQ LLNPRELLSG  420
IRTSRLRDRK KEDRELLVKQ EFLQDMISEN ELICSFLGKK SVDNVVLWEP DLLPSLTALH  480
PCSSCSKAPE KKGEDGPRIG STQSSSKDDS SSDGTACMTG TQSKGLSMDS KQAPEGEKLD  540
TDDGDDLPFD LSIDSGSLTC VACGILGYPF MAILQPSRKA LEEISLVDKE RYKLSCEKEI  600
CSNVLPCSPN DGSSGCPLIA NRSSSPVENA NLSHQDVKPI RSDISLMGKE FNGTLGKHIG  660
TSCSCSSENT IHPYGDTETP EKKIPSDCPG SELSKQSGRG DVNVPDVEGS EETISWNTGC  720
AFARPRIFCL QHALEIEELL ASKGGVHALI ICHADYVKLK ALAISIAEEI EFQFDYKDVA  780
LANASKSNLH LINISIDDEG YEEEGTDWTS RMGLNLKHSS KIRKETSESQ EQPPLSFWGL  840
FSKPSPISVV SNLKWLCRKA RTPYKVIGYA SSPDVVATPD KVKPAVTKTQ IDTSGNAHEN  900
IGSEQTLQQD CVLQESNDVA DMCKRPKDSP TTVAVSAGKP TREQCGAEST ELSTVKQFLD  960
NGLIAEGGSM NFISNHEHLE SDNATSVCKD EQLQVQQDQL AMVLCNNPNT ELVAGELHGG  1020
AASSTLENED SCGNTSYCSD TVLKNSKPDT DDQPETCDRS VVLVTPKSSC DQMISSSDRS  1080
CSLTLDCPVS TDAAFSSEKL SMAHDLMGSE LQAVHNSKAE VAASLTDVKG AKLNSIHTAQ  1140
LPHESPSSDF IISEGAQSAS TTAIPRKNGT SMHTESNSID ILLGVLADES KVSSGKDEVG  1200
KASLTLMTLA GNDQSADDVT QDEVAEITDP SHGFCASDIV SRSIGSSNRT NIICYARRKH  1260
KRKSGSEFNI NSPQSLGSFV RSPCESLRPR TRPAIVEDMT NETKTAEAST ANKRKKAKVE  1320
AFQCDIEFCD MTFETKAELR AHQRNICTDE SCGKRFSSHK YLKRHQCVHR DERPFKCPWD  1380
GCPMTFKWLW AQTEHIRVHT GERPYKCSAP DCGQSFRYVS DYSRHRKKFN HY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-74234188352Transcription factor jumonji (Jmj) family protein
6ip4_A1e-74234188352Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206213QRKKKQKR
2207214RKKKQKRE
312561262RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630483.10.0lysine-specific demethylase SE14-like isoform X2
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0E0GGW70.0A0A0E0GGW7_ORYNI; Uncharacterized protein
STRINGONIVA03G03740.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-180C2H2 family protein