PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G06470.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 542aa    MW: 60514.9 Da    PI: 6.2588
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G06470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.55.6e-1281655332374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++++ +c +av++++    + l+++l++++s +g+pmqRl ay++e+L arl+++++ lyk+l+++e +   s e +++++l++e++P++kf++
  ONIVA03G06470.1 165 KQVIAACGKAVDENS-WYRDLLISELRNMVSISGEPMQRLGAYMLEGLVARLSSTGHALYKSLKCKEPT---SFELMSYMHLLYEICPFFKFGY 254
                      677888999998854.4568899*********************************************9...99999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN aI eav+ge+ vHiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s   +   l  +g+rL ++A+++g+pfefn+ v  + +
  ONIVA03G06470.1 255 MSANGAIAEAVKGENFVHIIDFQIAQGSQWATMIQALAARPGGPPYLRITGIDDSNSAhaRGGGLDIVGRRLFNIAQSCGLPFEFNA-VPAASH 347
                      ******************************************************8888889999***********************.799999 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++ le+L++++gE+++Vn+++qlh+++desv +e++rd++L++vk+lsP+vv++veqea++n+++F++r le+l+yy+a+f+++++  pr++++
  ONIVA03G06470.1 348 EVMLEHLDIRSGEVIVVNFAYQLHHTPDESVGIENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYLETLDYYTAMFEAIDVACPRDDKK 441
                      999******************************************************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl++aGF+p+pls  +++++k ll  ++s  y++ee++g+l+lgWk+r+Lv+ SaWr
  ONIVA03G06470.1 442 RISTEQHCVARDIVNLIACEGAERVERHEPFGKWRARLSMAGFRPYPLSALVNNTIKKLLDSYHSY-YKLEERDGALYLGWKNRKLVVSSAWR 533
                      ****************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.845138514IPR005202Transcription factor GRAS
PfamPF035142.0E-125165533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQASNRPYRY PDNSQIPYYS RSSMHVGQNG TYHVQQNHED LYASSDDGSQ NGNSKAQGLQ  60
AQYCTLDSSS GNFMYPAHSS TSSHISGSPI SQQDSHSEHT SGSPASASCV TEVPGLRFTT  120
IEEIENAMFG PEPDTVSSDC SLLTDSAFYQ DNWREHLGIN TGDLKQVIAA CGKAVDENSW  180
YRDLLISELR NMVSISGEPM QRLGAYMLEG LVARLSSTGH ALYKSLKCKE PTSFELMSYM  240
HLLYEICPFF KFGYMSANGA IAEAVKGENF VHIIDFQIAQ GSQWATMIQA LAARPGGPPY  300
LRITGIDDSN SAHARGGGLD IVGRRLFNIA QSCGLPFEFN AVPAASHEVM LEHLDIRSGE  360
VIVVNFAYQL HHTPDESVGI ENHRDRILRM VKGLSPRVVT LVEQEANTNT APFFNRYLET  420
LDYYTAMFEA IDVACPRDDK KRISTEQHCV ARDIVNLIAC EGAERVERHE PFGKWRARLS  480
MAGFRPYPLS ALVNNTIKKL LDSYHSYYKL EERDGALYLG WKNRKLVVSS AWRFFRGFLV  540
DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-581615331375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1166040.0AC116604.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence.
GenBankAC1507510.0AC150751.1 Oryza sativa Japonica Group chromosome 3 clone OSJNOa0279P04, complete sequence.
GenBankAK0733860.0AK073386.1 Oryza sativa Japonica Group cDNA clone:J033041E22, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630858.10.0scarecrow-like protein 21
RefseqXP_015630859.10.0scarecrow-like protein 21
RefseqXP_015630860.10.0scarecrow-like protein 21
RefseqXP_015630861.10.0scarecrow-like protein 21
RefseqXP_015630862.10.0scarecrow-like protein 21
RefseqXP_015630863.10.0scarecrow-like protein 21
RefseqXP_025879855.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0E0GHX20.0A0A0E0GHX2_ORYNI; Uncharacterized protein
STRINGONIVA03G06470.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]