PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G06800.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 543aa    MW: 55410.4 Da    PI: 8.0593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G06800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027129151123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  ONIVA03G06800.1 129 WKCDKCSKKYAVQSDWKAHTKTC 151
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-4117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PRINTSPR012171.0E-8206218No hitNo description
PRINTSPR012171.0E-8220236No hitNo description
PRINTSPR012171.0E-8248260No hitNo description
PRINTSPR012171.0E-8261282No hitNo description
PRINTSPR012171.0E-8337362No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEVETSSGTA ERGAGAGAQQ QPPPQPQPQP PAKKKRALPG MPDPDAEVIA LSPKTLLATN  60
RFVCEICNKG ATRTCSCTGA GTTCRGSCGS GAGRRCGSGC TCAHDPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKKYAV QSDWKAHTKT CGSREYRCDC GTLFSRRDSF ITHRAFCDAL  180
AEESAKARAA PPPPADEDGT SASAGAPPPQ APLPPPAPVP APAPPPPPAA APAPAAQPEQ  240
RDRDAALDQF ATPAPAPAPP PVTAPPPPPV AAPNDCVSSS SSGVAPTSQS LLSSMFAPPS  300
VAQAPQYADP IGVGAGGHQE RAVPAKPPAL CLAPNASSSL FTAPVPADRQ QFAPPPPPSP  360
SPHMSATALL QKAAQMGATS SSSSFLRCLG LDMSSSSSAP PSSSGQQQQH HHHHHQETMQ  420
VPLPASSLPE WPPRLQPEPS PMLSSGLGLG LPYDATGGPV SLPELMMGQS TLFSAKPATL  480
DFLGLGVSPT GASTSRGFPT FIQPIGGAVS LAGSATVAAE TFGAANGGQA NPWERNPSSS  540
PIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34125186364Zinc finger protein JACKDAW
5b3h_F2e-34125186364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1156870.0AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence.
GenBankAC1164260.0AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632656.10.0protein indeterminate-domain 1
TrEMBLA0A0E0GI160.0A0A0E0GI16_ORYNI; Uncharacterized protein
STRINGONIVA03G06800.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.15e-56C2H2-like zinc finger protein