PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G08950.4
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 271aa    MW: 30745.5 Da    PI: 8.3307
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G08950.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.8e-19231091199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f++F++dg   f  +v+vf++
  ONIVA03G08950.4  23 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLIFRYDGAAAF--TVTVFDE 109
                      455669**********999999999***************77999999**************************998888..9999986 PP
2B347.92.4e-151722441487
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + l +p +f e+h++  +e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL +gD++ F++ ++
  ONIVA03G08950.4 172 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 244
                      56889********988554..4555.5599*******9876667777*************************6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.07113110IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1913116IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-1913108No hitNo description
Gene3DG3DSA:2.40.330.101.6E-2014112IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1515110IPR003340B3 DNA binding domain
PfamPF023621.5E-1523109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-24155266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-16156247IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-5157266IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351159266IPR003340B3 DNA binding domain
PfamPF023623.3E-13173244IPR003340B3 DNA binding domain
CDDcd100172.50E-10174240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV  60
KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLIFRYDGAA AFTVTVFDET MCRRDYRRHH  120
DAAGTGSSSS SDSSDAAAAA AATAAAEGVG DVALSQFAVT LRQCNLEDKQ AQYLNVPMEF  180
QEAHEYARRE KVVLRMRGEA WTVRLKHSRR ERGQRTAFRY GWHRFCVDNG LAVGDTCFFR  240
VLREGDLRRG GAADDHVLKV AVRKADGTTL E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708610.0AK070861.1 Oryza sativa Japonica Group cDNA clone:J023073O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.11e-174B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-175Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0E0GIW40.0A0A0E0GIW4_ORYNI; Uncharacterized protein
STRINGONIVA03G08950.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-20B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]