PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G10680.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 250aa    MW: 27382.7 Da    PI: 8.2372
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G10680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like43.28.6e-1482123150
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 
                      k+r++W+peLH+rFv  +++L G++         lmkv+gLt ++vkSHL
  ONIVA03G10680.1  82 KARRCWSPELHRRFVATLQRLDGPQ--------GLMKVDGLTDDEVKSHL 123
                      68*******************9998........79**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.42E-680124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-1180123IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-1182125IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSISNHHVSN AFMPLATSPV FAKSPEKAAT ATPLPAAVPD LSLSSPACPA APASVTSSAV  60
TDVARVQRRR QQQQQQQAVQ RKARRCWSPE LHRRFVATLQ RLDGPQGLMK VDGLTDDEVK  120
SHLHVVQSQL LLLQPKKIAI CRWQQFDTPL LEKKNSRISK QIVKKYRLHT RRASDCGGDS  180
GGLWTPPPEQ YTTSQHNMSP ALTVSSSHAV SVTAGDSCDG GEEEEEEEDD GKSESYSWEM  240
QNGARASLSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879396.17e-77LOW QUALITY PROTEIN: transcription factor HHO2-like
TrEMBLA0A0E0GJJ40.0A0A0E0GJJ4_ORYNI; Uncharacterized protein
STRINGONIVA03G10680.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-12G2-like family protein