PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G12480.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 84aa    MW: 9185.21 Da    PI: 8.5165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G12480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.7e-152979256
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     +++GVr ++ +g++ AeI++      ++++ +lg f+taeeA + +++a+++l+g+
  ONIVA03G12480.1 29 KFRGVRKRP-WGKYGAEIHV----SqQSAHMWLGMFDTAEEATRVYDHAALRLRGP 79
                     89*******.**********....3245**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-222884IPR001471AP2/ERF domain
PfamPF008471.3E-82978IPR001471AP2/ERF domain
PROSITE profilePS5103218.4132984IPR001471AP2/ERF domain
SMARTSM003804.2E-182984IPR001471AP2/ERF domain
CDDcd000182.45E-212984No hitNo description
SuperFamilySSF541711.31E-162984IPR016177DNA-binding domain
PRINTSPR003671.5E-83041IPR001471AP2/ERF domain
PRINTSPR003671.5E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MCRSGEEEDG SGGGRGGFGT SVDVAPERKF RGVRKRPWGK YGAEIHVSQQ SAHMWLGMFD  60
TAEEATRVYD HAALRLRGPS GMTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1629841470Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046361e-133AP004636.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0685B10.
GenBankAP0149641e-133AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-133CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642210.22e-30ethylene-responsive transcription factor 11
TrEMBLA0A0E0GK633e-55A0A0E0GK63_ORYNI; Uncharacterized protein
STRINGONIVA03G12480.15e-56(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-22cytokinin response factor 3