PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G16290.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 487aa    MW: 53733.5 Da    PI: 10.7901
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G16290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10202232434
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                       k+ rr+++NReAAr+sR+RKka++++Le  
  ONIVA03G16290.1 202 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 232
                      5899************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.2E-7199262IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.875201245IPR004827Basic-leucine zipper domain
PfamPF001702.1E-7203233IPR004827Basic-leucine zipper domain
CDDcd147088.76E-21203255No hitNo description
SuperFamilySSF579597.8E-7204246No hitNo description
Gene3DG3DSA:1.20.5.1706.3E-8205245No hitNo description
PROSITE patternPS000360206221IPR004827Basic-leucine zipper domain
PfamPF141448.4E-33285360IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MVQVLPQGKP IYNSLLPRLS SVPLLTKPHC SVGPWTHLSA TRPFSPTPPS FNPLTRAHAP  60
SPVVAFLASP LSLPSDQPDL CASPHFSLSL FALPSRPRLH RRSRPRRRPP AAGLLRIRTR  120
RGLSPRSPRR GGDSGISVII GHLKVACIPV TKPGMADASS RTDTSTVLDT DDKNQMVDGQ  180
SGAIVPSNSS DRSDRSDKPM DQKVLRRLAQ NREAARKSRL RKKAYVQQLE SSKLKLASLE  240
QEINKARQQG IYISSSGDQT HAMSGNGAMT FDLEYARWLE EQNKQINELR TAVNAHASDS  300
DLRLIVDGIM AHYDEIFRLK GVAAKADVFH ILSGMWKTPA ERCFLWLGGF RSSELLKLLV  360
NQLEPLTEQQ LLGLSNLQQS SQQAEDALSQ GMEALQQSLA DTLAGSLGPS GSSGNVANYM  420
GQMAMAMGKL GTLENFLRQA DNLRQQTLHQ MQRILTIRQA ARALLAIHDY FSRLRALSSL  480
WLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422570.0AK242257.1 Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence.
GenBankAY6204140.0AY620414.1 Oryza sativa (japonica cultivar-group) clone OSJNBa0005J15 bZIP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632465.10.0transcription factor TGA2.2
RefseqXP_015632466.10.0transcription factor TGA2.2
RefseqXP_015632467.10.0transcription factor TGA2.2
SwissprotQ6IVC30.0TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBLA0A0E0GLM60.0A0A0E0GLM6_ORYNI; Uncharacterized protein
STRINGONIVA03G16290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-137TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC
    Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light.
    Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20
    [PMID:15986920]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]