PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G16560.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 188aa MW: 20815.6 Da PI: 11.2516

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G16560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.9	2.6e-14	81	122	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +r +r++kNRe+A rsR+RK+a++ eLe+k+ Le+eNk+L+ ONIVA03G16560.1 81 RRKKRMIKNRESAARSRARKQAYTNELENKISRLEEENKRLR 122 6899*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.1E-11	77	139	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	79	122	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.73E-17	81	122	No hit	No description
Pfam	PF00170	9.7E-12	81	122	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.88E-10	81	123	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-14	81	123	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MTLEDFLSRA GADSGSGGGG GADGARWARA HHHHVGRPVP RPLGLGAGPV LDALYHDGPV 60 SGSKRAPAAG EGAAAEKTVE RRKKRMIKNR ESAARSRARK QAYTNELENK ISRLEEENKR 120 LRMHKAPEPV VQYVPQQEPK NQLRRTQDLG RKPLADRKAA LTGDPISRRR NPQHSLAHDI 180 LLRWCDIR

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC118674	1e-169	AC118674.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0093J20, from chromosome 3, complete sequence.
GenBank	AP014959	1e-169	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632165.1	1e-100	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	6e-28	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0E0GLQ9	1e-133	A0A0E0GLQ9_ORYNI; Uncharacterized protein
STRING	ONIVA03G16560.1	1e-134	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4441	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	9e-26	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]