PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G16810.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 333aa MW: 33657.3 Da PI: 6.3872

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G16810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.8	5.9e-06	40	76	2	37
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 r+R+t+++eq+ +Le+ F+ +p +e ++ k+l ONIVA03G16810.1 40 RSRWTPKPEQILILESIFNTgMVNPPNDETPRIRKQL 76 89***************989*999999999998 PP
2	Wus_type_Homeobox	68.7	1.1e-22	39	99	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtP+peQi iLe+++++G+++P+++e+ ri+++L++yG+ ++N +QN+ R+r + ONIVA03G16810.1 39 VRSRWTPKPEQILILESIFNTGMVNPPNDETPRIRKQLQKYGADANAN--DCYQNHNPRSRPR 99 589***************************************855555..5567776666644 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEGSSNSPDR QSSGGSPPEE RGGGGSGGGG GRSAAGEPVR SRWTPKPEQI LILESIFNTG 60 MVNPPNDETP RIRKQLQKYG ADANANDCYQ NHNPRSRPRH RQSQTHAAAA AAAASSSSPS 120 ANTSPAAASA ATVQVGLPPV AVVHTMAMGG SACQYEQQAS SSSSSGSTGG SSLGLFAHGA 180 GASGAGGYLQ ASCGASASAS SALAPGLMGD VVDSGGSDDL FAISRQMGFV GSPRCSPASS 240 PATPSSAATA AQQQFYSCQL PAATITVFIN GVPMEMPRGP IDLRAMFGQD VMLVHSTGAL 300 LPVNDYGILM QSLQIGESYF LMHEPAGVQL VLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	31	RGGGGSGGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111000	0.0	AK111000.1 Oryza sativa Japonica Group cDNA clone:002-174-E11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629005.1	1e-127	WUSCHEL-related homeobox 6 isoform X1
Refseq	XP_015629006.1	1e-127	WUSCHEL-related homeobox 6 isoform X2
Swissprot	A2XG77	1e-130	WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBL	A0A0E0GLT2	0.0	A0A0E0GLT2_ORYNI; Uncharacterized protein
STRING	ONIVA03G16810.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	5e-21	WUSCHEL related homeobox 12