PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G19590.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 198aa MW: 22582.6 Da PI: 10.1141

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G19590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.1	8.5e-13	58	110	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +WT+eEd l+++ ++ G ++W+++a+ m +R++ qc++rw+++l ONIVA03G19590.1 58 AWTPEEDACLARLAAENGFRHWRRVAESMAaarsgrrPRRSPGQCRDRWRDHL 110 7*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.674	51	114	IPR017930	Myb domain
SMART	SM00717	2.9E-10	55	112	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.87E-11	57	142	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-12	58	110	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-12	58	112	IPR009057	Homeodomain-like
CDD	cd00167	2.62E-5	58	110	No hit	No description
SuperFamily	SSF46689	9.72E-10	111	178	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-4	113	139	IPR009057	Homeodomain-like
PROSITE profile	PS50090	5.935	123	177	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MEKKIDVIAM ELQGLEQEAA VQPPASAAFP SSAEEAAAAA SPTSGGKRIV LRIRLPPAWT 60 PEEDACLARL AAENGFRHWR RVAESMAAAR SGRRPRRSPG QCRDRWRDHL ARDCRDRWRD 120 HLARDVYHRP FTADDDAELA RLLLKRDGDG ERSWKDISRA AYCRTSRGMR RRWGELRDSD 180 AFLRKLWCPP PPPMQPSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645625.1	5e-55	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A0E0GMT8	1e-138	A0A0E0GMT8_ORYNI; Uncharacterized protein
STRING	ONIVA03G19590.1	1e-138	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46