PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G19990.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 306aa    MW: 32489.6 Da    PI: 6.3526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G19990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l+ +v+++G+g+W++++ + g+ R+ k+c++rw +yl
  ONIVA03G19990.1 14 KGPWTPEEDMVLASYVQEHGPGNWRAVPPRTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding445.3e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++  E+ l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  ONIVA03G19990.1  67 RGGFSHHEERLILHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129422.963965IPR017930Myb domain
SuperFamilySSF466891.06E-2911108IPR009057Homeodomain-like
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
PfamPF002498.1E-161461IPR001005SANT/Myb domain
CDDcd001674.70E-111661No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129418.16666116IPR017930Myb domain
SMARTSM007172.3E-1366114IPR001005SANT/Myb domain
PfamPF002491.0E-1267112IPR001005SANT/Myb domain
CDDcd001671.49E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRPPCCEKE GVKKGPWTPE EDMVLASYVQ EHGPGNWRAV PPRTGLLRCS KSCRLRWTNY  60
LRPGIRRGGF SHHEERLILH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLALTS  120
SSSPPTPTTP LVARGQWERK LQTDIDLARR ALRDALSVDD AASPAMISSG PPAPAAAAAY  180
ALSERNISVM LSGWAAPPPA RKELSACNPA AATTTPGGAA AESASTAGTS SELTADCCSG  240
GGDSSASNCL PSSMLLACDD GDATATAAGE APLSAIESWL LLDDSGEPQL ALDEQLLDVA  300
LRNYAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-24141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-241411627128MYB TRANSFORMING PROTEIN
1mse_C1e-24141164105C-Myb DNA-Binding Domain
1msf_C1e-24141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847620.0AC084762.8 Oryza sativa chromosome 3 BAC OSJNBa0013O08 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630096.10.0myb-related protein 306
SwissprotP813925e-93MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0E0GMZ40.0A0A0E0GMZ4_ORYNI; Uncharacterized protein
STRINGONIVA03G19990.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-84myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]