PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G20150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 227aa    MW: 24478.5 Da    PI: 7.2963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G20150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-101765255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGV +   +grW+  I   +      +r+ +g +gt+eeAa a+++a +++ g
  ONIVA03G20150.1 17 KYKGVAR-TADGRWRGFITNkF-----GRRYGVGDHGTPEEAALAHDRAILAILG 65
                     8****95.559****8877744.....5*********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-151778No hitNo description
PROSITE profilePS5103211.8381776IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-91775IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-91776IPR001471AP2/ERF domain
SMARTSM003800.00181782IPR001471AP2/ERF domain
PfamPF008472.8E-71764IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAGDGTGDDD DVHARVKYKG VARTADGRWR GFITNKFGRR YGVGDHGTPE EAALAHDRAI  60
LAILGAHASP AALNFRAAFS DTELRFLRGP HAPSRRAAGV VAAVMRGAAF DAALERFAAR  120
AYDAHTDPEL ALDVAAFRLA TRDAGTPLAQ PDAERAAFVA AARNKVHDAA WLRSYLRRRR  180
LVGATFEDEN RWPPVVPPAV ADVGDGFAGN ELVYLPYGSC HVDEMMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GN161e-159A0A0E0GN16_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QYW31e-159A0A0E0QYW3_ORYRU; Uncharacterized protein
TrEMBLA2Z7391e-159A2Z739_ORYSI; Uncharacterized protein
TrEMBLQ948I81e-159Q948I8_ORYSJ; AP2 domain containing protein
STRINGORUFI10G09840.11e-160(Oryza rufipogon)
STRINGONIVA03G20150.11e-160(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718