PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G22450.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 214aa    MW: 23940.6 Da    PI: 10.0342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G22450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS71.91.2e-22198239345
             GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                      +vv+eqe     + + erf+e l+yy+alfd+le++ +r s er+ vEr llg+ei+n+v c g e rerhe       rle aGF+ vpls++
  ONIVA03G22450.1   1 MVVTEQEPHA--AGLTERFVEVLNYYAALFDCLEVGGARGSVERTRVERWLLGEEIKNIVVCDGGELRERHE-------RLEGAGFGRVPLSYY 85 
                      6777887655..899********************************************************9.......999************ PP

             GRAS 333 aakqaklllrkvk 345
                      a  qa+++ +   
  ONIVA03G22450.1  86 ALLQARRVAQGLR 98 
                      ******9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.1821107IPR005202Transcription factor GRAS
PfamPF035144.1E-20198IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVVTEQEPHA AGLTERFVEV LNYYAALFDC LEVGGARGSV ERTRVERWLL GEEIKNIVVC  60
DGGELRERHE RLEGAGFGRV PLSYYALLQA RRVAQGLRLR RLQGPGGEGQ LLPLLARSRP  120
LLRLRMARPP LRRLAPLAAI DASPLLPRHC YLALLPAASP PYSSRRRLAL LSIRTAQSRE  180
REDEGREEGK ERVGLFGQAD RCCLRRSHAD SAVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034580.0AP003458.4 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0701E03.
GenBankAP0046870.0AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GNT81e-147A0A0E0GNT8_ORYNI; Uncharacterized protein
STRINGONIVA03G22450.11e-148(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-16scarecrow-like 3