PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G24160.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 478aa    MW: 51426.3 Da    PI: 9.3626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G24160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000637395123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F +   L  H ++H
  ONIVA03G24160.1 73 FRCTVCGKAFASYQALGGHKSSH 95
                     89**********99999999888 PP
2zf-C2H213.80.00017326348123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk F+++  L  H  +H
  ONIVA03G24160.1 326 FRCSVCGKAFPSHQALGGHKASH 348
                      89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-127297IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.82473100IPR007087Zinc finger, C2H2
SuperFamilySSF576675.14E-87395No hitNo description
SMARTSM003550.0227395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SuperFamilySSF576675.14E-8130157No hitNo description
PfamPF139121.8E-10135158IPR007087Zinc finger, C2H2
SMARTSM003550.44135157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39135162IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
PfamPF139129.9E-12325350IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658326353IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-8326348No hitNo description
SMARTSM003550.0068326348IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280328348IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-8382409No hitNo description
PfamPF139121.0E-10386410IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328387409IPR007087Zinc finger, C2H2
SMARTSM003550.6387409IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MTAALQALLD PTALSLGLPT PAINKEEYLA ICLAALACTR AGKALVGVGG QQQVQACNKW  60
LCPAPAAPEE LRFRCTVCGK AFASYQALGG HKSSHRKPPS PGDHYGAAAA AQQLASAGDS  120
KEDSASSAAG STGPHRCTIC RRSFATGQAL GGHKRCHYWD GTSVSVSVSA SASAASSAVR  180
NFDLNLMPLP ESTAAAGIKR WAEEEEVQSP LPVKKLRINR VLEYLEQRND LILNNVQVNF  240
VKWKANFKEE FSQHKHRVKE LDKPFWQSWI HNLSVHAHHT KMVTNMTHDD PRFMALAQAG  300
VGGQWPAQKQ QIDMAPPAPE RELLRFRCSV CGKAFPSHQA LGGHKASHRK PPTAALPMHV  360
IDAPPPPSAE DTASSSTTTT TSGGGRHRCS VCHRTFATGQ ALGGHKRCHY WDGLSVVSVT  420
ASASGSGSSS VRNFDLNLKP VPETVAAGVR RWGEEEEVQS PLPFKKRRLS SPSLELNL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1068870.0AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence.
GenBankAC1478030.0AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence.
GenBankAK0598390.0AK059839.1 Oryza sativa Japonica Group cDNA clone:006-206-D03, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8304150.0CT830415.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104A19, full insert sequence.
GenBankHQ8588230.0HQ858823.1 Oryza sativa Japonica Group isolate UT1321 C2H2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629109.11e-123zinc finger protein 36-like
SwissprotQ75KE51e-124ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A0E0GPG20.0A0A0E0GPG2_ORYNI; Uncharacterized protein
STRINGONIVA03G24160.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-27salt tolerance zinc finger
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]