PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G25220.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 513aa    MW: 55581.2 Da    PI: 8.2898
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G25220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-17121170155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  ONIVA03G25220.1 121 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 170
                      78*******************......55************************998 PP
2AP242.22.1e-13213263155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  ONIVA03G25220.1 213 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 263
                      89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-16121179IPR016177DNA-binding domain
PfamPF008472.4E-9121170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-17122178IPR001471AP2/ERF domain
SMARTSM003803.1E-31122184IPR001471AP2/ERF domain
PROSITE profilePS5103217.82122178IPR001471AP2/ERF domain
CDDcd000184.65E-11122177No hitNo description
CDDcd000186.77E-27213273No hitNo description
SuperFamilySSF541718.5E-17213272IPR016177DNA-binding domain
PfamPF008475.0E-9213263IPR001471AP2/ERF domain
PROSITE profilePS5103216.107214271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-16214271IPR001471AP2/ERF domain
SMARTSM003804.2E-33214277IPR001471AP2/ERF domain
PRINTSPR003672.3E-6215226IPR001471AP2/ERF domain
PRINTSPR003672.3E-6253273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVLDLNVESP GGSAATSSSS TPPPPPDGGG GGYFRFDLLG GSPDEDGCSP PVMTRQLFPS  60
PSAVVALAGD GSSTPPPTMP TPAAAGEGPW PRRAADLGVA QSQRSPAGGK KSRRGPRSRS  120
SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LDADINFNLN  180
DYEDDLKQMR NWTKEEFVHI LRRQSTGFAR GSSKYRGVTL HKCGRWEARM GQLLGKKYIY  240
LGLFDSEIEA ARAYDRAAIR FNGREAVTNF DPSSYDGDVL PETDNEVVDG DIIDLNLRIS  300
QPNVHELKSD GTLTGFQLNC DSPEASSSVV TQSSVACASS GHIDVPASTF ICISLSGLLC  360
EPQGSTYGEK TCVGSPVVPY FVVMANAGLP FAITPYCSII RILYGHRRRR RPPAFLPPPS  420
ISRPPPVLLP PDHLTATYSG GGDASPCIHR RLPITFVVCP ERDLLHMISL SMFHLVMIRI  480
LTLMILLSSF LSAKPPIVTV LPGKHPCTSL TLQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3746630.0DQ374663.1 Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647892.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8B8J20.0AP23_ORYSI; APETALA2-like protein 3
TrEMBLA0A0E0GPS70.0A0A0E0GPS7_ORYNI; Uncharacterized protein
STRINGONIVA03G25220.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.38e-88related to AP2.7