PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G27270.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 562aa    MW: 63676.3 Da    PI: 9.453
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G27270.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-16107188997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++  + +++p+kf++++gg    s+t+ l +++g ++ vk+  + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  ONIVA03G27270.2 107 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 188
                      334.456********888877..899****************..*********************************99999..66665 PP
2B362.95.3e-20320419198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef
  ONIVA03G27270.2 320 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKKFVRDNHVKEGDMCIFHLTkFTgGEF 411
                      6677888888887788***********6..446779999985666****99977999999*************************874445666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                        +v+++r
  ONIVA03G27270.2 412 GATVHLLR 419
                      66777666 PP
3B333.47.8e-114595571198
                      HHTT-EE--HHH.HTT.....---..--SEEEEEETTS.....-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE. CS
               B3  11 lksgrlvlpkkfaeeh.....ggkkeesktltledesg.....rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefe 91 
                      l+ +r++l  + +++      ++++e+++ ++++++s+         vk+  r +sg   ++t GW++Fv++n L++ D+++F+l+++  ++  
  ONIVA03G27270.2 459 LTADRVSLTEEQVRKVeevvhSIQSEGPMYVSIMNKSNvgtdgLYIIVKM--RPRSGDaRMFTLGWRDFVRDNLLQTEDICLFQLMKNseRGLA 550
                      55567777777777777777777777888888888887555444445555..666655689***********************9977344555 PP

                      .EEEEE- CS
               B3  92 lvvkvfr 98 
                      ++v+++r
  ONIVA03G27270.2 551 MKVHIIR 557
                      6666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-2097196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-1998193IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.12598191IPR003340B3 DNA binding domain
CDDcd100172.45E-1599189No hitNo description
SMARTSM010199.9E-8101191IPR003340B3 DNA binding domain
PfamPF023628.6E-15106187IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-21312405IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-24314407IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-22318419No hitNo description
PfamPF023623.3E-20320420IPR003340B3 DNA binding domain
SMARTSM010198.4E-8320422IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197321421IPR003340B3 DNA binding domain
SMARTSM010190.19450559IPR003340B3 DNA binding domain
PfamPF023621.9E-8464558IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-11481559IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.741506559IPR003340B3 DNA binding domain
CDDcd100173.36E-8506557No hitNo description
Gene3DG3DSA:2.40.330.107.9E-10506559IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRSGRQRAG EAVGGGRSYL AAQEGAETGL  60
NELARPRGRF TCMAGQGSQK KKSCDWSKRY VDHLNGKMKC FHLQMSANFG HSMTIPNKFL  120
DHFGGTLSRT IELVSPKGIV YIVKVTEHMN KTILQCGWEA FVDAHHIEEN DSLLFRHIEN  180
SRFEVLILDS DGCEKVFTCA GIKKTSSVQE RNAAPVDISR STHDETTQSS GSKKIVRCQR  240
ASDSQRGKTA KLAETSSSGE SGEEGTDSST SEDESSYELD DPQMPPGRNY VLSRWTSLSE  300
AQEEKVDMLV QDIQPEIPVF VAIMKHSNVN SRRACLVIPK RYASAHFPLE SQTITLQRQG  360
KNKKWYPMFY IRKDGSGYML YGCWKKFVRD NHVKEGDMCI FHLTKFTGGE FGATVHLLRE  420
TKSGSLGSFH TSHKRFDLRD GRTWPKVTGV RRVSSRPYLT ADRVSLTEEQ VRKVEEVVHS  480
IQSEGPMYVS IMNKSNVGTD GLYIIVKMRP RSGDARMFTL GWRDFVRDNL LQTEDICLFQ  540
LMKNSERGLA MKVHIIRHNE RS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021690.0AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.10.0B3 domain-containing protein Os03g0620400 isoform X1
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0E0GQK40.0A0A0E0GQK4_ORYNI; Uncharacterized protein
STRINGONIVA03G27270.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-12B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]