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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ONIVA03G27320.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | B3 | ||||||||
| Protein Properties | Length: 901aa MW: 104043 Da PI: 9.8707 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 66.1 | 5e-21 | 24 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
ffkv+ +++ ++++p kfae++ + + t++l+ ++g++ +v + +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f v
ONIVA03G27320.2 24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 108
56666..445555.6********888655..4459***************..**************************************..99 PP
EEE-S CS
B3 95 kvfrk 99
k+f+
ONIVA03G27320.2 109 KIFDP 113
99986 PP
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| 2 | B3 | 35.2 | 2.1e-11 | 212 | 284 | 1 | 76 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76
f+ v+++s+v+++ + + +++k+a+e+ gg+ ++lt +++g++W+vk++++k++ r +l+kGW++F ++n+L+
ONIVA03G27320.2 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQK 284
77889999999999999**********76555....3455.667*********77666666.89*************86 PP
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| 3 | B3 | 65.5 | 7.8e-21 | 310 | 391 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
++r+++p kfa++++g+ skt++le ++g +++v++ +kk + vl++GW++Fv+a++L+ gDf+vFk++g +f l v +f+
ONIVA03G27320.2 310 FHKRMTIPDKFARHFKGV--ISKTIKLEPRNGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 391
4568********999999..899****************..*******************************976..88889999985 PP
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| 4 | B3 | 40.6 | 4.6e-13 | 523 | 573 | 34 | 86 |
SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 34 ktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
++l+l++ + +sW+v++ ++++ks++ lt+GWk+Fv++n L+ gD ++F+ +
ONIVA03G27320.2 523 QELMLRH-RDKSWKVRFyRFNNKSRK--LTQGWKRFVHDNYLRMGDLCLFEILK 573
5677766.78******9455777777..9**********************655 PP
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| 5 | B3 | 57.5 | 2.6e-18 | 607 | 693 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
fkv+ ++ r+++p++f++ + gk ++t++l+ ++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+ +v
ONIVA03G27320.2 607 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KVL 691
5555..44444.57********555666..66789999999********..********************************986555..777 PP
EE CS
B3 96 vf 97
+f
ONIVA03G27320.2 692 IF 693
77 PP
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| 6 | B3 | 47.6 | 3.1e-15 | 817 | 900 | 12 | 99 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
ks+ + + +++a+ + ke + +t +++g+ Wev ++ +k ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
ONIVA03G27320.2 817 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 900
56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 6.47E-25 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 5.5E-24 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 12.59 | 21 | 114 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.64E-20 | 23 | 112 | No hit | No description |
| Pfam | PF02362 | 5.6E-19 | 24 | 112 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.5E-13 | 24 | 114 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 4.3E-24 | 200 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.88E-15 | 205 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.33E-13 | 210 | 283 | No hit | No description |
| Pfam | PF02362 | 1.2E-9 | 212 | 283 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 0.04 | 212 | 294 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 8.445 | 213 | 283 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.7E-25 | 294 | 405 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.12E-23 | 296 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 12.929 | 299 | 392 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.42E-20 | 300 | 390 | No hit | No description |
| Pfam | PF02362 | 1.5E-18 | 302 | 390 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.1E-11 | 302 | 392 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 3.0E-17 | 482 | 575 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.53E-15 | 483 | 575 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.60E-10 | 493 | 570 | No hit | No description |
| SMART | SM01019 | 1.5E-4 | 494 | 584 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.6E-10 | 522 | 574 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.251 | 524 | 584 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 5.69E-22 | 599 | 698 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 13.704 | 603 | 696 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.8E-16 | 606 | 693 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.0E-12 | 606 | 696 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 6.77E-21 | 606 | 693 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 3.8E-21 | 616 | 704 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 799 | 898 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 4.05E-18 | 800 | 898 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 12.266 | 806 | 901 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 2.83E-13 | 808 | 899 | No hit | No description |
| SMART | SM01019 | 5.6E-8 | 809 | 901 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.2E-13 | 816 | 900 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009909 | Biological Process | regulation of flower development | ||||
| GO:0010048 | Biological Process | vernalization response | ||||
| GO:0005654 | Cellular Component | nucleoplasm | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 901 aa Download sequence Send to blast |
MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN 60 GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA 120 SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS 180 SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP 240 GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQKMRKLNT RSTARDDQEK 300 YFFKVMIGDF HKRMTIPDKF ARHFKGVISK TIKLEPRNGY TFDVQVTKKL NILVLGSGWE 360 SFVNAHDLNM GDFLVFKYNG DFLLQVLIFD PSGCEKSTSC SMENAIDHVG QGWKEHNDIS 420 TSYHDQPKGN KHWMQKDSSS KGNKIGNTRS SNTPSNFSGC ILPRGTCLPV VQEKKMKEKI 480 QAIHSKTPMY GNVMTKCNVS GSPCVLEITQ LYDDAYLPFN NGQELMLRHR DKSWKVRFYR 540 FNNKSRKLTQ GWKRFVHDNY LRMGDLCLFE ILKNKYTMNM RRPGARCREG HAHFNGNHID 600 GQYKNFFKVM IGRFRERMII PNEFLQYFRG KIPRTIKLQL RDGCTYDVQV TKNLGKISLQ 660 SGWKAFVTAH DLQMGDFLVF SYDGISKLKV LIFGPSGCEK VHSRPTLKNA THCGEKWEEP 720 LHISSNSHDL PVKSPQNVSK SEKQWDSSEQ ENDTANIEEV ALQGDDLQGH PVLNCILPKH 780 TRLTDMQKQQ LESKVGAIHS EIPIYGCILR KSRVHGKSQT VDICREYADV YLPFKELNMT 840 LQRHGKNWEV LCRTKDTRTK RLSTGWSRFA QENNLQVGDI CLFELLKKKE YSMNVHIIPK 900 K |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025880058.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
| Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
| TrEMBL | A0A0E0GQL2 | 0.0 | A0A0E0GQL2_ORYNI; Uncharacterized protein | ||||
| STRING | ONIVA03G27320.1 | 0.0 | (Oryza nivara) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G33280.1 | 4e-23 | B3 family protein | ||||




