PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G28660.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 258aa    MW: 28883.1 Da    PI: 11.2838
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G28660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY119.17e-3741092114
            YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                      +++ ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+  +q+l+ae+h        l+++lk++++++++n++++ s+s++
  ONIVA03G28660.1   4 QIVPAPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSRY 89 
                      67889*******************************************************9........899********************** PP

            YABBY  96 vssekl.senedeevprvpp 114
                       ++ ++ s+n++e++ +v +
  ONIVA03G28660.1  90 GRVPMMfSKNDTEHMLHVRQ 109
                      **9998899*****998765 PP
2YABBY124.81.2e-38167233102170
            YABBY 102 senedeev.prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      s ++++ + +r+p    PPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  ONIVA03G28660.1 167 SASSRRAArSRPP---PPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 233
                      3333333303334...59**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-649233IPR006780YABBY protein
SuperFamilySSF470951.96E-8174227IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.106.9E-5182227IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSAQIVPAPE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP  60
AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRQS PAAAARVRHR  120
PHVVVVVAPS PLSSSSLWSR CRRSRPPSLL SVASTARIRP VTRRAVSASS RRAARSRPPP  180
PPEKRQRVPS AYNRFIKEEI RRIKANNPDI SHREAFSTAA KNWAHFPNIH FGLGSHESSK  240
KLDEAIGAPS PQKVQRLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740141e-179AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds.
GenBankAF0987531e-179AF098753.1 Oryza sativa clone FIL2 unknown mRNA.
GenBankAK0702581e-179AK070258.1 Oryza sativa Japonica Group cDNA clone:J023044A02, full insert sequence.
GenBankAK0704791e-179AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence.
GenBankEU8469821e-179EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795817.11e-76protein YABBY 2-like isoform X1
SwissprotQ10FZ72e-75YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A0E0GR300.0A0A0E0GR30_ORYNI; Uncharacterized protein
STRINGONIVA03G28660.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.16e-24YABBY family protein