PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G30270.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 219aa    MW: 22522.8 Da    PI: 7.6715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G30270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-08190216430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                       h ++Er+RR++iN++f eL +++P +
  ONIVA03G30270.1 190 EHIIAERKRREKINQRFIELSTVIPGL 216
                      699**********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.38E-7178217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.722186219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6189216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-8190216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-6191218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEDSSLFMEW AMETLQHLHP LPATPPPAGG GYAGDNATFP SLQALRESSV SQNGMAPPEP  60
TAHEGHRASN SWSSGDTDSV SGGGGGAVME HDGWSTSPNS VRCAAGGGGG GGGLWPVSWN  120
FSSAMTQPCN DQATPPNPPP TTRARYGGGG VRYLPAAVSP SPSAQTRRAS SKGNGGGGSG  180
SSSAAPYAQE HIIAERKRRE KINQRFIELS TVIPGLKKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199ERKRRE
2195200RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1163690.0AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629952.11e-133transcription factor NAI1
TrEMBLA0A0E0GRM81e-157A0A0E0GRM8_ORYNI; Uncharacterized protein
STRINGONIVA03G30270.11e-157(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-10bHLH family protein