PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G30380.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 599aa    MW: 65536.4 Da    PI: 5.3944
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G30380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.1e-085095422255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  ONIVA03G30380.1 509 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 542
                      59*****************************885 PP
2ELK33.87.5e-12206226222
              ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                       +++L++KYsgyL+sL++E+s
  ONIVA03G30380.1 206 TRRHLMNKYSGYLNSLWTEIS 226
                      69******************8 PP
3ELK34.83.6e-12462483122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +Ll+KYsgyL+sL+ E+s
  ONIVA03G30380.1 462 ELKSHLLNKYSGYLSSLWRELS 483
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-1969113IPR005540KNOX1
PfamPF037902.3E-1971107IPR005540KNOX1
SMARTSM012561.2E-27123174IPR005541KNOX2
PfamPF037912.4E-21127172IPR005541KNOX2
PROSITE profilePS512139.027205225IPR005539ELK domain
SMARTSM011887.1E-5205226IPR005539ELK domain
PfamPF037894.6E-8207226IPR005539ELK domain
Gene3DG3DSA:1.10.10.604.1E-4234259IPR009057Homeodomain-like
SMARTSM012554.8E-22322366IPR005540KNOX1
PfamPF037901.5E-21323364IPR005540KNOX1
SMARTSM012562.8E-27372423IPR005541KNOX2
PfamPF037917.2E-22377422IPR005541KNOX2
PROSITE profilePS5121310.353462482IPR005539ELK domain
PfamPF037894.0E-9462483IPR005539ELK domain
SMARTSM011884.0E-7462483IPR005539ELK domain
PROSITE profilePS5007112.455482545IPR001356Homeobox domain
SuperFamilySSF466893.89E-18483555IPR009057Homeodomain-like
SMARTSM003899.5E-12484549IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-25487546IPR009057Homeodomain-like
CDDcd000861.43E-11491545No hitNo description
PfamPF059201.6E-15502541IPR008422Homeobox KN domain
PROSITE patternPS000270520543IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MEQLHLLLAS GGGSKASTTI TPFCLARDLA STSSPSPAAV AAPAPPPEAT SGSEQSIHGS  60
GTGLQSSEAM IKAKIMSHPL YPSLLRAFVD CKKVGAPPEV VGRLSSLAVV TDVPQYSGDR  120
WLPAQQPAAD PELDQFMETY CYMLTRYGQE LARPIQEAEE FFRGIEEQID SLALDEDVSY  180
DYEDEAAGGL PEKSAAFGEN EVTTTTRRHL MNKYSGYLNS LWTEISNKKK NSTGHLPRDA  240
RHKLLQWWHL HYRWPYPSIS TPMEQQLPLL APDSKAATSS PLCLTLDNPT STSTSPAVPS  300
SAPPPAAALE PSRQSFHERE TDAIKAKIMS HPLYPALLRA FIDCQKVGAP PEVVGRLSAL  360
AGELDSRAED MHLQGQSSDP ELDEFMETYI DMLVSYRQEL TRPIQEADQF FRNMEAQIDS  420
FTLDDNGSEG GNSSEDEQEA GGGDMASAGL PEITIPCAED KELKSHLLNK YSGYLSSLWR  480
ELSKKKKKGK LPRDARQKLL HWWQLHYRWP YPSELEKAAL AESTGLDAKQ INNWFINQRK  540
RHWKPTPPAM EYRSLQPAGA ASYGGASAGA STSGGGSAVV RGMEGQHFTG GGAYPRGGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950040.0HQ695004.1 Oryza sativa fused compound leaf 2 (FCL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628832.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX70.0KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A0E0GRN90.0A0A0E0GRN9_ORYNI; Uncharacterized protein
STRINGONIVA03G30380.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-81KNOTTED-like from Arabidopsis thaliana