PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G30380.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 344aa    MW: 37283.7 Da    PI: 6.3521
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G30380.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.16.9e-092542872255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  ONIVA03G30380.2 254 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 287
                      58*****************************885 PP
2ELK34.73.9e-12206226222
              ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                       +++L++KYsgyL+sL++E+s
  ONIVA03G30380.2 206 TRRHLMNKYSGYLNSLWTEIS 226
                      69******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-1969113IPR005540KNOX1
PfamPF037901.1E-1971107IPR005540KNOX1
SMARTSM012561.2E-27123174IPR005541KNOX2
PfamPF037911.1E-21127172IPR005541KNOX2
PROSITE profilePS512139.027205225IPR005539ELK domain
SMARTSM011887.1E-5205226IPR005539ELK domain
PfamPF037892.4E-8207226IPR005539ELK domain
PROSITE profilePS5007111.596227290IPR001356Homeobox domain
SMARTSM003899.8E-11229294IPR001356Homeobox domain
SuperFamilySSF466891.33E-17229300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-24234291IPR009057Homeodomain-like
CDDcd000863.62E-12236290No hitNo description
PfamPF059204.5E-16247286IPR008422Homeobox KN domain
PROSITE patternPS000270265288IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEQLHLLLAS GGGSKASTTI TPFCLARDLA STSSPSPAAV AAPAPPPEAT SGSEQSIHGS  60
GTGLQSSEAM IKAKIMSHPL YPSLLRAFVD CKKVGAPPEV VGRLSSLAVV TDVPQYSGDR  120
WLPAQQPAAD PELDQFMETY CYMLTRYGQE LARPIQEAEE FFRGIEEQID SLALDEDVSY  180
DYEDEAAGGL PEKSAAFGEN EVTTTTRRHL MNKYSGYLNS LWTEISNKKK NSTGHLPRDA  240
RHKLLQWWHL HYRWPYPSEL EKAALAESTG LDAKQINNWF INQRKRHWKP TPPAMEYRSL  300
QPAGAASYGG ASAGASTSGG GSAVVRGMEG QHFTGGGAYP RGGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950040.0HQ695004.1 Oryza sativa fused compound leaf 2 (FCL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879711.10.0putative homeobox protein knotted-1-like 5
SwissprotQ75LX90.0KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5
TrEMBLA0A0E0GRP00.0A0A0E0GRP0_ORYNI; Uncharacterized protein
STRINGOBART03G29180.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-66KNOTTED-like from Arabidopsis thaliana